SNP Report
Basic Infomation
| Name | rs28370656 dbSNP |
|---|---|
| Location | chr:12,40407459 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 46)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10506145 | 0.93[CEU][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1086490 | 1.00[JPT][hapmap] |
| rs10877837 | 1.00[JPT][hapmap] |
| rs11174370 | 1.00[JPT][hapmap] |
| rs11564133 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11564139 | 0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs11564160 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11564194 | 1.00[JPT][hapmap] |
| rs11564223 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11564282 | 1.00[JPT][hapmap] |
| rs12312535 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12371119 | 1.00[JPT][hapmap] |
| rs12810368 | 1.00[JPT][hapmap] |
| rs12827948 | 1.00[JPT][hapmap] |
| rs1482282 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs17442108 | 1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes] |
| rs17442304 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[EUR][1000 genomes] |
| rs17442469 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs17442756 | 1.00[JPT][hapmap] |
| rs17443112 | 1.00[JPT][hapmap];0.93[AFR][1000 genomes] |
| rs17458299 | 0.85[CEU][hapmap];1.00[AFR][1000 genomes];0.97[EUR][1000 genomes] |
| rs17458396 | 1.00[AFR][1000 genomes];0.97[EUR][1000 genomes] |
| rs17458403 | 1.00[AFR][1000 genomes];0.97[EUR][1000 genomes] |
| rs17461082 | 1.00[CHB][hapmap] |
| rs17465519 | 0.85[AFR][1000 genomes] |
| rs17465540 | 0.85[AFR][1000 genomes] |
| rs17483628 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs17559478 | 1.00[JPT][hapmap] |
| rs2046929 | 0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2086598 | 1.00[AFR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2404346 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2404574 | 0.93[CEU][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs2708404 | 1.00[JPT][hapmap] |
| rs28370644 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs28370654 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs28370659 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs28370681 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs28740188 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs55707305 | 1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7305377 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7306718 | 1.00[JPT][hapmap] |
| rs7484475 | 1.00[JPT][hapmap] |
| rs7969495 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7974522 | 1.00[JPT][hapmap];0.93[AFR][1000 genomes] |
| rs7974972 | 1.00[JPT][hapmap] |
| rs992851 | 1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | Distal transcriptional regulation |
| MUC19 | Distal transcriptional regulation |
| SLC2A13 | Distal transcriptional regulation |
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014