SNP Report

Basic Infomation

Name	rs7974972 dbSNP
Location	chr:12,40545488
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 44)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10506145	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10506154	1.00[JPT][hapmap]
rs1086490	1.00[JPT][hapmap]
rs10877837	1.00[JPT][hapmap]
rs11564133	1.00[JPT][hapmap]
rs11564139	1.00[JPT][hapmap]
rs11564160	1.00[JPT][hapmap]
rs11564194	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564223	1.00[JPT][hapmap]
rs11564282	1.00[JPT][hapmap]
rs12312535	1.00[JPT][hapmap]
rs12810368	1.00[JPT][hapmap]
rs12827948	1.00[JPT][hapmap]
rs1482282	1.00[JPT][hapmap]
rs17442304	1.00[JPT][hapmap]
rs17442469	1.00[JPT][hapmap]
rs17442742	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17442749	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17442756	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17442763	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17442853	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17443112	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17458752	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17458759	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17458766	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17465519	0.86[ASN][1000 genomes]
rs17465540	0.86[ASN][1000 genomes]
rs17483628	1.00[JPT][hapmap]
rs17484493	1.00[JPT][hapmap]
rs2046929	1.00[JPT][hapmap]
rs2404574	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2638222	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2708404	0.89[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28370644	1.00[JPT][hapmap]
rs28370656	1.00[JPT][hapmap]
rs28370659	1.00[JPT][hapmap]
rs67985538	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7305766	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7306718	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7308399	0.89[CEU][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7484475	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7969495	1.00[JPT][hapmap]
rs7974522	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs992851	1.00[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
ENSG00000223914	Proximal transcriptional regulation
LRRK2	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)