SNP Report
Basic Infomation
| Name | rs17442763 dbSNP |
|---|---|
| Location | chr:12,40538796 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11564194 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs17442742 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs17442749 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs17442756 | 0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs17442853 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs17458752 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs17458759 | 0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs17458766 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs2638222 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2708404 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs67985538 | 0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7306718 | 0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7308399 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7484475 | 0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7974972 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000260943 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014