SNP Report

Basic Infomation

Name	rs17442853 dbSNP
Location	chr:12,40544890
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 49)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10506145	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10878226	0.85[YRI][hapmap]
rs10878244	0.82[YRI][hapmap]
rs10878246	1.00[YRI][hapmap]
rs11175620	0.85[YRI][hapmap]
rs11175645	0.85[YRI][hapmap]
rs11175655	1.00[YRI][hapmap]
rs11175658	0.85[YRI][hapmap]
rs11175666	0.85[YRI][hapmap]
rs11564122	1.00[YRI][hapmap]
rs11564194	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12810368	1.00[JPT][hapmap]
rs12827948	1.00[JPT][hapmap]
rs1482282	1.00[JPT][hapmap]
rs17442108	1.00[JPT][hapmap]
rs17442742	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17442749	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17442756	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17442763	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17443112	0.86[ASN][1000 genomes]
rs17458396	1.00[JPT][hapmap]
rs17458752	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17458759	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17458766	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17458836	1.00[YRI][hapmap]
rs17458974	1.00[YRI][hapmap]
rs17461082	1.00[JPT][hapmap]
rs17465519	0.86[ASN][1000 genomes]
rs17465540	0.86[ASN][1000 genomes]
rs17483628	1.00[JPT][hapmap]
rs17491515	1.00[JPT][hapmap]
rs17518057	1.00[JPT][hapmap]
rs17519573	0.85[YRI][hapmap]
rs2404574	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2638222	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2708404	0.89[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28370607	1.00[JPT][hapmap]
rs28370805	1.00[JPT][hapmap]
rs67985538	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7135678	0.85[YRI][hapmap]
rs7294619	0.85[YRI][hapmap]
rs7305155	1.00[YRI][hapmap]
rs7305766	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7306718	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7308399	0.89[CEU][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7484475	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7969495	1.00[JPT][hapmap]
rs7974522	0.86[ASN][1000 genomes]
rs7974972	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
LRRK2	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)