SNP Report
Basic Infomation
| Name | rs10878244 dbSNP |
|---|---|
| Location | chr:12,40631608 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 80)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10506143 | 1.00[JPT][hapmap] |
| rs10506144 | 1.00[JPT][hapmap] |
| rs10506146 | 1.00[JPT][hapmap] |
| rs10506153 | 0.81[GIH][hapmap];1.00[ASN][1000 genomes] |
| rs10878246 | 0.93[CEU][hapmap];1.00[GIH][hapmap];0.89[MEX][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11175186 | 1.00[JPT][hapmap] |
| rs11175655 | 0.81[GIH][hapmap] |
| rs11564108 | 1.00[JPT][hapmap] |
| rs11564123 | 1.00[JPT][hapmap] |
| rs11564128 | 1.00[ASN][1000 genomes] |
| rs11564131 | 1.00[JPT][hapmap] |
| rs11564152 | 1.00[JPT][hapmap] |
| rs11564153 | 1.00[JPT][hapmap] |
| rs11564175 | 1.00[ASN][1000 genomes] |
| rs11564177 | 0.81[GIH][hapmap];1.00[ASN][1000 genomes] |
| rs11564185 | 1.00[JPT][hapmap] |
| rs11564187 | 1.00[JPT][hapmap] |
| rs11564196 | 1.00[JPT][hapmap] |
| rs11564203 | 0.81[GIH][hapmap];1.00[ASN][1000 genomes] |
| rs11564204 | 1.00[ASN][1000 genomes] |
| rs11564205 | 0.81[GIH][hapmap];1.00[ASN][1000 genomes] |
| rs11564207 | 1.00[ASN][1000 genomes] |
| rs11564209 | 1.00[JPT][hapmap] |
| rs11564210 | 1.00[JPT][hapmap] |
| rs11564216 | 1.00[JPT][hapmap] |
| rs11564218 | 1.00[JPT][hapmap] |
| rs11564267 | 1.00[ASN][1000 genomes] |
| rs11564271 | 1.00[JPT][hapmap] |
| rs11829088 | 0.81[GIH][hapmap];1.00[ASN][1000 genomes] |
| rs11834950 | 1.00[ASN][1000 genomes] |
| rs12422544 | 1.00[JPT][hapmap] |
| rs12422796 | 1.00[JPT][hapmap] |
| rs12423419 | 1.00[JPT][hapmap] |
| rs12423551 | 1.00[JPT][hapmap] |
| rs12424294 | 1.00[JPT][hapmap] |
| rs12425561 | 1.00[JPT][hapmap] |
| rs12426378 | 1.00[JPT][hapmap] |
| rs12427022 | 1.00[JPT][hapmap] |
| rs12427245 | 1.00[JPT][hapmap] |
| rs1388585 | 1.00[JPT][hapmap] |
| rs1388597 | 1.00[JPT][hapmap] |
| rs1463717 | 1.00[JPT][hapmap] |
| rs1491936 | 1.00[ASN][1000 genomes] |
| rs17442853 | 0.82[YRI][hapmap] |
| rs17443552 | 1.00[ASN][1000 genomes] |
| rs17443600 | 1.00[JPT][hapmap] |
| rs17443656 | 1.00[JPT][hapmap] |
| rs17444054 | 1.00[JPT][hapmap] |
| rs17444096 | 1.00[ASN][1000 genomes] |
| rs17444542 | 1.00[ASN][1000 genomes] |
| rs17444570 | 1.00[ASN][1000 genomes] |
| rs17458230 | 1.00[JPT][hapmap] |
| rs17458836 | 0.82[YRI][hapmap] |
| rs17466016 | 1.00[JPT][hapmap] |
| rs17466430 | 1.00[ASN][1000 genomes] |
| rs17483919 | 1.00[JPT][hapmap] |
| rs17484141 | 1.00[JPT][hapmap] |
| rs17491061 | 1.00[ASN][1000 genomes] |
| rs17492138 | 1.00[ASN][1000 genomes] |
| rs17519573 | 0.93[CEU][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17520251 | 1.00[ASN][1000 genomes] |
| rs17520278 | 1.00[ASN][1000 genomes] |
| rs1907632 | 0.85[GIH][hapmap];1.00[ASN][1000 genomes] |
| rs1907633 | 1.00[ASN][1000 genomes] |
| rs2131081 | 1.00[JPT][hapmap] |
| rs28365169 | 1.00[JPT][hapmap] |
| rs28365173 | 1.00[JPT][hapmap] |
| rs28365206 | 1.00[JPT][hapmap] |
| rs28365229 | 1.00[JPT][hapmap] |
| rs4628750 | 1.00[JPT][hapmap] |
| rs4768213 | 1.00[JPT][hapmap] |
| rs4768226 | 1.00[JPT][hapmap] |
| rs4768228 | 1.00[JPT][hapmap] |
| rs57997594 | 1.00[ASN][1000 genomes] |
| rs60776971 | 1.00[ASN][1000 genomes] |
| rs61007767 | 1.00[ASN][1000 genomes] |
| rs73275761 | 1.00[ASN][1000 genomes] |
| rs73279554 | 1.00[ASN][1000 genomes] |
| rs73279557 | 1.00[ASN][1000 genomes] |
| rs9705735 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014