SNP Report
Name | rs1388585   dbSNP |
---|---|
Location | chr:12,40531691 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10506143 | 1.00[JPT][hapmap];0.83[AMR][1000 genomes] |
rs10506144 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs10506146 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs10506154 | 1.00[CEU][hapmap] |
rs10878244 | 1.00[JPT][hapmap] |
rs11174697 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes] |
rs11175186 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs11564108 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs11564123 | 1.00[JPT][hapmap] |
rs11564131 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes] |
rs11564152 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
rs11564153 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes] |
rs11564185 | 1.00[CEU][hapmap] |
rs11564187 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes] |
rs11564196 | 1.00[JPT][hapmap] |
rs11564199 | 1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs11564209 | 1.00[CEU][hapmap] |
rs11564210 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes] |
rs11564216 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs11564218 | 1.00[JPT][hapmap];0.83[AMR][1000 genomes] |
rs11564271 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
rs12422544 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12422796 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
rs12423419 | 1.00[JPT][hapmap] |
rs12423551 | 1.00[JPT][hapmap] |
rs12424040 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs12424294 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs12425561 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs12426378 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs12427022 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs12427245 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
rs1388597 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes] |
rs1463717 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
rs17442924 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
rs17443185 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
rs17443206 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
rs17443600 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
rs17443656 | 1.00[CEU][hapmap] |
rs17444054 | 1.00[JPT][hapmap] |
rs17444103 | 1.00[CEU][hapmap] |
rs17466016 | 1.00[CEU][hapmap] |
rs17483919 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
rs17484003 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs17484141 | 1.00[JPT][hapmap] |
rs2131081 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs2244534 | 0.85[YRI][hapmap] |
rs2244780 | 0.85[YRI][hapmap] |
rs2253021 | 0.85[YRI][hapmap];0.87[AFR][1000 genomes] |
rs2253171 | 1.00[YRI][hapmap];0.87[AFR][1000 genomes] |
rs2253867 | 0.87[AFR][1000 genomes] |
rs2638235 | 0.85[YRI][hapmap] |
rs2638241 | 0.85[YRI][hapmap] |
rs2638243 | 0.85[YRI][hapmap] |
rs2638261 | 1.00[YRI][hapmap] |
rs2638265 | 1.00[YRI][hapmap] |
rs2708403 | 0.83[YRI][hapmap] |
rs2708405 | 0.82[YRI][hapmap] |
rs2708406 | 0.85[YRI][hapmap] |
rs2708416 | 0.85[YRI][hapmap] |
rs2708460 | 0.87[AFR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs2708461 | 1.00[YRI][hapmap];0.87[AFR][1000 genomes] |
rs2708475 | 1.00[YRI][hapmap] |
rs2708483 | 1.00[YRI][hapmap] |
rs2708484 | 1.00[YRI][hapmap] |
rs28365169 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs28365173 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs28365206 | 1.00[CHB][hapmap];0.80[ASN][1000 genomes] |
rs28365229 | 1.00[CEU][hapmap] |
rs28365689 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs28370649 | 1.00[CEU][hapmap] |
rs28370650 | 1.00[CEU][hapmap] |
rs28370664 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes] |
rs28370682 | 1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs28370830 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs4628750 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
rs4768213 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs4768226 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
rs4768228 | 1.00[JPT][hapmap] |
Symbol | Regulation type |
---|---|
LRRK2 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014