SNP Report

Basic Infomation

Name	rs1388585 dbSNP
Location	chr:12,40531691
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 78)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10506143	1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs10506144	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10506146	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10506154	1.00[CEU][hapmap]
rs10878244	1.00[JPT][hapmap]
rs11174697	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs11175186	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11564108	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11564123	1.00[JPT][hapmap]
rs11564131	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11564152	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11564153	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs11564185	1.00[CEU][hapmap]
rs11564187	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs11564196	1.00[JPT][hapmap]
rs11564199	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11564209	1.00[CEU][hapmap]
rs11564210	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs11564216	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11564218	1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs11564271	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12422544	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12422796	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12423419	1.00[JPT][hapmap]
rs12423551	1.00[JPT][hapmap]
rs12424040	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12424294	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12425561	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12426378	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12427022	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12427245	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1388597	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs1463717	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17442924	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17443185	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17443206	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17443600	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17443656	1.00[CEU][hapmap]
rs17444054	1.00[JPT][hapmap]
rs17444103	1.00[CEU][hapmap]
rs17466016	1.00[CEU][hapmap]
rs17483919	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17484003	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17484141	1.00[JPT][hapmap]
rs2131081	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2244534	0.85[YRI][hapmap]
rs2244780	0.85[YRI][hapmap]
rs2253021	0.85[YRI][hapmap];0.87[AFR][1000 genomes]
rs2253171	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs2253867	0.87[AFR][1000 genomes]
rs2638235	0.85[YRI][hapmap]
rs2638241	0.85[YRI][hapmap]
rs2638243	0.85[YRI][hapmap]
rs2638261	1.00[YRI][hapmap]
rs2638265	1.00[YRI][hapmap]
rs2708403	0.83[YRI][hapmap]
rs2708405	0.82[YRI][hapmap]
rs2708406	0.85[YRI][hapmap]
rs2708416	0.85[YRI][hapmap]
rs2708460	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2708461	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs2708475	1.00[YRI][hapmap]
rs2708483	1.00[YRI][hapmap]
rs2708484	1.00[YRI][hapmap]
rs28365169	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28365173	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28365206	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs28365229	1.00[CEU][hapmap]
rs28365689	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28370649	1.00[CEU][hapmap]
rs28370650	1.00[CEU][hapmap]
rs28370664	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs28370682	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28370830	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4628750	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4768213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4768226	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4768228	1.00[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
LRRK2	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)