SNP Report
Basic Infomation
| Name | rs28370650 dbSNP |
|---|---|
| Location | chr:12,40399948 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 69)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10506144 | 1.00[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs11174697 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs11175186 | 0.86[EUR][1000 genomes] |
| rs11564199 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs11564216 | 1.00[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs12422544 | 1.00[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs12424040 | 0.86[EUR][1000 genomes] |
| rs12426378 | 1.00[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs1388585 | 1.00[CEU][hapmap] |
| rs17442095 | 1.00[JPT][hapmap] |
| rs17442346 | 1.00[JPT][hapmap] |
| rs17442353 | 1.00[JPT][hapmap] |
| rs17442490 | 1.00[JPT][hapmap] |
| rs17442882 | 1.00[JPT][hapmap] |
| rs17442924 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs17443178 | 0.86[EUR][1000 genomes] |
| rs17443185 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs17443206 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs17458257 | 1.00[JPT][hapmap] |
| rs17458745 | 1.00[JPT][hapmap] |
| rs17458773 | 1.00[JPT][hapmap] |
| rs17458974 | 1.00[JPT][hapmap] |
| rs17460894 | 1.00[JPT][hapmap] |
| rs17460992 | 1.00[JPT][hapmap] |
| rs17483502 | 1.00[JPT][hapmap] |
| rs17484003 | 0.86[EUR][1000 genomes] |
| rs17489459 | 1.00[JPT][hapmap] |
| rs17489480 | 1.00[JPT][hapmap] |
| rs17489666 | 1.00[JPT][hapmap] |
| rs17490013 | 1.00[JPT][hapmap] |
| rs17518014 | 1.00[JPT][hapmap] |
| rs17518050 | 1.00[JPT][hapmap] |
| rs17518183 | 1.00[JPT][hapmap] |
| rs17518427 | 1.00[JPT][hapmap] |
| rs17518441 | 1.00[JPT][hapmap] |
| rs17518476 | 1.00[JPT][hapmap] |
| rs17518672 | 1.00[JPT][hapmap] |
| rs17518735 | 1.00[JPT][hapmap] |
| rs2708460 | 0.93[EUR][1000 genomes] |
| rs28365169 | 1.00[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs28365173 | 1.00[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs28365202 | 1.00[JPT][hapmap] |
| rs28365689 | 0.86[EUR][1000 genomes] |
| rs28370603 | 1.00[JPT][hapmap] |
| rs28370641 | 1.00[JPT][hapmap] |
| rs28370649 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28370657 | 1.00[JPT][hapmap] |
| rs28370664 | 1.00[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs28370682 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs28370698 | 1.00[JPT][hapmap] |
| rs28370706 | 1.00[JPT][hapmap] |
| rs28370720 | 1.00[JPT][hapmap] |
| rs28370728 | 1.00[JPT][hapmap] |
| rs28370730 | 1.00[JPT][hapmap] |
| rs28370743 | 1.00[JPT][hapmap] |
| rs28370759 | 1.00[JPT][hapmap] |
| rs28370766 | 1.00[JPT][hapmap] |
| rs28370770 | 1.00[JPT][hapmap] |
| rs28370777 | 1.00[JPT][hapmap] |
| rs28370778 | 1.00[JPT][hapmap] |
| rs28370782 | 1.00[JPT][hapmap] |
| rs28370784 | 1.00[JPT][hapmap] |
| rs28370786 | 1.00[JPT][hapmap] |
| rs28370792 | 1.00[JPT][hapmap] |
| rs28370801 | 1.00[JPT][hapmap] |
| rs28370811 | 1.00[JPT][hapmap] |
| rs28370825 | 1.00[JPT][hapmap] |
| rs28370830 | 0.93[EUR][1000 genomes] |
| rs4768213 | 1.00[CEU][hapmap];0.86[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014