SNP Report
Basic Infomation
| Name | rs28370778 dbSNP |
|---|---|
| Location | chr:12,40411392 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 71)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs17442095 | 1.00[JPT][hapmap] |
| rs17442346 | 1.00[JPT][hapmap] |
| rs17442353 | 1.00[JPT][hapmap] |
| rs17442490 | 1.00[JPT][hapmap] |
| rs17442882 | 1.00[JPT][hapmap] |
| rs17458257 | 1.00[JPT][hapmap] |
| rs17458745 | 1.00[JPT][hapmap] |
| rs17458773 | 1.00[JPT][hapmap] |
| rs17458974 | 1.00[JPT][hapmap] |
| rs17460894 | 1.00[JPT][hapmap] |
| rs17460992 | 1.00[JPT][hapmap] |
| rs17483502 | 1.00[JPT][hapmap] |
| rs17489225 | 1.00[AMR][1000 genomes] |
| rs17489302 | 1.00[AMR][1000 genomes] |
| rs17489379 | 1.00[AMR][1000 genomes] |
| rs17489459 | 1.00[JPT][hapmap] |
| rs17489480 | 1.00[JPT][hapmap] |
| rs17489666 | 1.00[JPT][hapmap];1.00[AMR][1000 genomes] |
| rs17489889 | 1.00[AMR][1000 genomes] |
| rs17490013 | 1.00[JPT][hapmap] |
| rs17490418 | 1.00[AMR][1000 genomes] |
| rs17490578 | 1.00[AMR][1000 genomes] |
| rs17490599 | 1.00[AMR][1000 genomes] |
| rs17490620 | 1.00[AMR][1000 genomes] |
| rs17518014 | 1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs17518050 | 1.00[JPT][hapmap];1.00[AMR][1000 genomes] |
| rs17518071 | 1.00[AMR][1000 genomes] |
| rs17518183 | 1.00[JPT][hapmap] |
| rs17518204 | 1.00[AMR][1000 genomes] |
| rs17518253 | 1.00[AMR][1000 genomes] |
| rs17518273 | 1.00[AMR][1000 genomes] |
| rs17518364 | 1.00[AMR][1000 genomes] |
| rs17518427 | 1.00[JPT][hapmap] |
| rs17518441 | 1.00[JPT][hapmap] |
| rs17518476 | 1.00[JPT][hapmap] |
| rs17518672 | 1.00[JPT][hapmap] |
| rs17518735 | 1.00[JPT][hapmap] |
| rs17518805 | 1.00[AMR][1000 genomes] |
| rs28365202 | 1.00[JPT][hapmap] |
| rs28370603 | 1.00[JPT][hapmap] |
| rs28370641 | 1.00[JPT][hapmap] |
| rs28370650 | 1.00[JPT][hapmap] |
| rs28370657 | 1.00[JPT][hapmap] |
| rs28370688 | 1.00[AMR][1000 genomes] |
| rs28370698 | 1.00[JPT][hapmap] |
| rs28370706 | 1.00[JPT][hapmap] |
| rs28370720 | 1.00[JPT][hapmap] |
| rs28370728 | 1.00[JPT][hapmap] |
| rs28370730 | 1.00[JPT][hapmap] |
| rs28370743 | 1.00[JPT][hapmap] |
| rs28370745 | 1.00[AMR][1000 genomes] |
| rs28370748 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370755 | 1.00[AMR][1000 genomes] |
| rs28370758 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370759 | 1.00[JPT][hapmap] |
| rs28370766 | 1.00[JPT][hapmap] |
| rs28370768 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370770 | 1.00[JPT][hapmap] |
| rs28370776 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370777 | 1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370780 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370782 | 1.00[JPT][hapmap] |
| rs28370783 | 1.00[AMR][1000 genomes] |
| rs28370784 | 1.00[JPT][hapmap] |
| rs28370786 | 1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370792 | 1.00[JPT][hapmap] |
| rs28370801 | 1.00[JPT][hapmap] |
| rs28370811 | 1.00[JPT][hapmap] |
| rs28370825 | 1.00[JPT][hapmap] |
| rs7306747 | 1.00[AMR][1000 genomes] |
| rs7307258 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014