SNP Report
Basic Infomation
| Name | rs17490620 dbSNP |
|---|---|
| Location | chr:12,40620397 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 72)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11564113 | 1.00[JPT][hapmap] |
| rs11613829 | 1.00[JPT][hapmap] |
| rs17442095 | 1.00[JPT][hapmap] |
| rs17442346 | 1.00[JPT][hapmap] |
| rs17442353 | 1.00[JPT][hapmap] |
| rs17442490 | 1.00[JPT][hapmap] |
| rs17442882 | 1.00[JPT][hapmap] |
| rs17443421 | 1.00[JPT][hapmap] |
| rs17443552 | 1.00[JPT][hapmap] |
| rs17444103 | 1.00[JPT][hapmap] |
| rs17444542 | 1.00[JPT][hapmap] |
| rs17458257 | 1.00[JPT][hapmap] |
| rs17458745 | 1.00[JPT][hapmap] |
| rs17458773 | 1.00[JPT][hapmap] |
| rs17458974 | 1.00[JPT][hapmap] |
| rs17460894 | 1.00[JPT][hapmap] |
| rs17460992 | 1.00[JPT][hapmap] |
| rs17465716 | 1.00[JPT][hapmap] |
| rs17465849 | 1.00[JPT][hapmap] |
| rs17465891 | 1.00[JPT][hapmap] |
| rs17466030 | 1.00[JPT][hapmap] |
| rs17466220 | 1.00[JPT][hapmap] |
| rs17466269 | 1.00[JPT][hapmap] |
| rs17466297 | 1.00[JPT][hapmap] |
| rs17466339 | 1.00[JPT][hapmap] |
| rs17466451 | 1.00[JPT][hapmap] |
| rs17466633 | 1.00[JPT][hapmap] |
| rs17483502 | 1.00[JPT][hapmap] |
| rs17489225 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs17489302 | 1.00[AMR][1000 genomes] |
| rs17489379 | 1.00[AMR][1000 genomes] |
| rs17489459 | 1.00[JPT][hapmap] |
| rs17489480 | 1.00[JPT][hapmap] |
| rs17489666 | 1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs17489889 | 1.00[AMR][1000 genomes] |
| rs17490013 | 1.00[JPT][hapmap] |
| rs17490418 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17490578 | 1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17490599 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs17490762 | 1.00[JPT][hapmap] |
| rs17491110 | 1.00[JPT][hapmap] |
| rs17491410 | 1.00[JPT][hapmap] |
| rs17492138 | 1.00[JPT][hapmap] |
| rs17518014 | 1.00[JPT][hapmap];1.00[AMR][1000 genomes] |
| rs17518050 | 1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs17518071 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs17518183 | 1.00[JPT][hapmap] |
| rs17518204 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs17518253 | 1.00[AMR][1000 genomes] |
| rs17518273 | 1.00[AMR][1000 genomes] |
| rs17518364 | 1.00[AMR][1000 genomes] |
| rs17518427 | 1.00[JPT][hapmap] |
| rs17518441 | 1.00[JPT][hapmap] |
| rs17518476 | 1.00[JPT][hapmap] |
| rs17518672 | 1.00[JPT][hapmap] |
| rs17518735 | 1.00[JPT][hapmap] |
| rs17518805 | 1.00[AMR][1000 genomes] |
| rs17519566 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs17519797 | 1.00[JPT][hapmap] |
| rs17520634 | 1.00[JPT][hapmap] |
| rs17520655 | 1.00[JPT][hapmap] |
| rs28365202 | 1.00[JPT][hapmap] |
| rs28365243 | 1.00[JPT][hapmap] |
| rs28370776 | 1.00[AMR][1000 genomes] |
| rs28370777 | 1.00[AMR][1000 genomes] |
| rs28370778 | 1.00[AMR][1000 genomes] |
| rs28370780 | 1.00[AMR][1000 genomes] |
| rs28370783 | 1.00[AMR][1000 genomes] |
| rs28370786 | 1.00[JPT][hapmap];1.00[AMR][1000 genomes] |
| rs28370792 | 1.00[JPT][hapmap] |
| rs7306747 | 1.00[AMR][1000 genomes] |
| rs7307258 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000225342 | Proximal transcriptional regulation |
| ENSG00000225342 | Distal transcriptional regulation |
| LRRK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014