SNP Report

Basic Infomation

Name	rs17492138 dbSNP
Location	chr:12,40803486
Allele	A/C

LD-proxy of rSNPs(r²>0.8) (count: 66)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10506153	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10878244	1.00[ASN][1000 genomes]
rs10878246	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11564113	1.00[JPT][hapmap]
rs11564128	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11564175	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11564177	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11564203	1.00[ASN][1000 genomes]
rs11564204	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11564205	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11564207	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11564267	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11613829	1.00[JPT][hapmap]
rs11829088	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11834950	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1491936	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17128385	1.00[ASN][1000 genomes]
rs17443421	1.00[JPT][hapmap]
rs17443552	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17444096	1.00[ASN][1000 genomes]
rs17444103	1.00[JPT][hapmap]
rs17444542	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17444570	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17465716	1.00[JPT][hapmap]
rs17465849	1.00[JPT][hapmap]
rs17465891	1.00[JPT][hapmap]
rs17465912	1.00[CHB][hapmap]
rs17466030	1.00[JPT][hapmap]
rs17466037	1.00[CHB][hapmap]
rs17466220	1.00[JPT][hapmap]
rs17466269	1.00[JPT][hapmap]
rs17466297	1.00[JPT][hapmap]
rs17466339	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17466430	1.00[ASN][1000 genomes]
rs17466451	1.00[JPT][hapmap]
rs17466633	1.00[JPT][hapmap]
rs17467095	1.00[CHB][hapmap]
rs17490578	1.00[JPT][hapmap]
rs17490620	1.00[JPT][hapmap]
rs17490762	1.00[JPT][hapmap]
rs17491061	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17491110	1.00[JPT][hapmap]
rs17491410	1.00[JPT][hapmap]
rs17519573	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17519797	1.00[JPT][hapmap]
rs17520251	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17520278	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17520634	1.00[JPT][hapmap]
rs17520655	1.00[JPT][hapmap]
rs1907632	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1907633	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs28365243	1.00[JPT][hapmap]
rs55775102	1.00[ASN][1000 genomes]
rs56322620	1.00[ASN][1000 genomes]
rs57997594	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60776971	1.00[ASN][1000 genomes]
rs61007767	1.00[ASN][1000 genomes]
rs73115378	1.00[ASN][1000 genomes]
rs73115394	1.00[ASN][1000 genomes]
rs73115401	1.00[ASN][1000 genomes]
rs73117512	1.00[ASN][1000 genomes]
rs73119913	1.00[ASN][1000 genomes]
rs73275761	1.00[ASN][1000 genomes]
rs73279554	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73279557	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9705735	1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
MUC19	Distal transcriptional regulation
ENSG00000258167	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)