SNP Report
Basic Infomation
| Name | rs73279557 dbSNP |
|---|---|
| Location | chr:12,40803246 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 40)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10506153 | 1.00[ASN][1000 genomes] |
| rs10878244 | 1.00[ASN][1000 genomes] |
| rs10878246 | 1.00[ASN][1000 genomes] |
| rs11564128 | 1.00[ASN][1000 genomes] |
| rs11564175 | 1.00[ASN][1000 genomes] |
| rs11564177 | 1.00[ASN][1000 genomes] |
| rs11564203 | 1.00[ASN][1000 genomes] |
| rs11564204 | 1.00[ASN][1000 genomes] |
| rs11564205 | 1.00[ASN][1000 genomes] |
| rs11564207 | 1.00[ASN][1000 genomes] |
| rs11564267 | 1.00[ASN][1000 genomes] |
| rs11829088 | 1.00[ASN][1000 genomes] |
| rs11834950 | 1.00[ASN][1000 genomes] |
| rs1491936 | 1.00[ASN][1000 genomes] |
| rs17128385 | 1.00[ASN][1000 genomes] |
| rs17443552 | 1.00[ASN][1000 genomes] |
| rs17444096 | 1.00[ASN][1000 genomes] |
| rs17444542 | 0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17444570 | 0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17466430 | 1.00[ASN][1000 genomes] |
| rs17491061 | 1.00[ASN][1000 genomes] |
| rs17492138 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17519573 | 1.00[ASN][1000 genomes] |
| rs17520251 | 1.00[ASN][1000 genomes] |
| rs17520278 | 1.00[ASN][1000 genomes] |
| rs1907632 | 1.00[ASN][1000 genomes] |
| rs1907633 | 1.00[ASN][1000 genomes] |
| rs55775102 | 1.00[ASN][1000 genomes] |
| rs56322620 | 1.00[ASN][1000 genomes] |
| rs57997594 | 0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60776971 | 1.00[ASN][1000 genomes] |
| rs61007767 | 1.00[ASN][1000 genomes] |
| rs73115378 | 1.00[ASN][1000 genomes] |
| rs73115394 | 1.00[ASN][1000 genomes] |
| rs73115401 | 1.00[ASN][1000 genomes] |
| rs73117512 | 1.00[ASN][1000 genomes] |
| rs73119913 | 1.00[ASN][1000 genomes] |
| rs73275761 | 1.00[ASN][1000 genomes] |
| rs73279554 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9705735 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MUC19 | Distal transcriptional regulation |
| ENSG00000258167 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014