SNP Report
Basic Infomation
| Name | rs73115401 dbSNP |
|---|---|
| Location | chr:12,40950944 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1444203 | 1.00[ASN][1000 genomes] |
| rs1444204 | 1.00[ASN][1000 genomes] |
| rs1584093 | 1.00[ASN][1000 genomes] |
| rs17128385 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17444542 | 1.00[ASN][1000 genomes] |
| rs17444570 | 1.00[ASN][1000 genomes] |
| rs17492138 | 1.00[ASN][1000 genomes] |
| rs1867430 | 1.00[ASN][1000 genomes] |
| rs4275691 | 1.00[ASN][1000 genomes] |
| rs55775102 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56322620 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57997594 | 1.00[ASN][1000 genomes] |
| rs73115378 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73115394 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73117512 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73119913 | 1.00[ASN][1000 genomes] |
| rs73279554 | 1.00[ASN][1000 genomes] |
| rs73279557 | 1.00[ASN][1000 genomes] |
| rs7959703 | 1.00[ASN][1000 genomes] |
| rs9705735 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MUC19 | Proximal transcriptional regulation |
| ENSG00000207492 | Proximal transcriptional regulation |
| MUC19 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014