SNP Report
Basic Infomation
| Name | rs7959703 dbSNP |
|---|---|
| Location | chr:12,41084497 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1444203 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1444204 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1584093 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1596509 | 0.90[EUR][1000 genomes] |
| rs17128385 | 1.00[ASN][1000 genomes] |
| rs1867430 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4275691 | 0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55775102 | 1.00[ASN][1000 genomes] |
| rs56322620 | 1.00[ASN][1000 genomes] |
| rs6581931 | 0.90[EUR][1000 genomes] |
| rs73115378 | 1.00[ASN][1000 genomes] |
| rs73115394 | 1.00[ASN][1000 genomes] |
| rs73115401 | 1.00[ASN][1000 genomes] |
| rs73117512 | 1.00[ASN][1000 genomes] |
| rs73119913 | 1.00[ASN][1000 genomes] |
| rs935230 | 0.90[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CNTN1 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014