SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 12)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11836043	0.86[ASN][1000 genomes]
rs1444203	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs1444204	0.92[CEU][hapmap];0.88[TSI][hapmap];0.90[EUR][1000 genomes]
rs1584093	0.82[LWK][hapmap];0.88[TSI][hapmap];0.90[EUR][1000 genomes]
rs1596509	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1596539	0.85[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17120936	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs1867430	0.93[EUR][1000 genomes]
rs4275691	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs7301307	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs7959703	0.90[EUR][1000 genomes]
rs935230	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CNTN1	Proximal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 1)