SNP Report

Basic Infomation

Name	rs10878246 dbSNP
Location	chr:12,40632099
Allele	T/G

LD-proxy of rSNPs(r²>0.8) (count: 52)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10506153	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[ASN][1000 genomes]
rs10878226	1.00[YRI][hapmap]
rs10878244	0.93[CEU][hapmap];1.00[GIH][hapmap];0.89[MEX][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11175620	1.00[YRI][hapmap]
rs11175645	1.00[YRI][hapmap]
rs11175655	0.82[GIH][hapmap];1.00[YRI][hapmap]
rs11175658	1.00[YRI][hapmap]
rs11175666	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs11564122	1.00[YRI][hapmap]
rs11564128	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11564175	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11564177	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[ASN][1000 genomes]
rs11564203	0.82[GIH][hapmap];1.00[ASN][1000 genomes]
rs11564204	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11564205	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[ASN][1000 genomes]
rs11564207	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11564267	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11564269	1.00[CHD][hapmap]
rs11829088	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[ASN][1000 genomes]
rs11834950	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1491936	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17442853	1.00[YRI][hapmap]
rs17443552	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17444096	1.00[ASN][1000 genomes]
rs17444542	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17444570	1.00[ASN][1000 genomes]
rs17458836	1.00[YRI][hapmap]
rs17458974	1.00[YRI][hapmap]
rs17465912	1.00[CHB][hapmap]
rs17466037	1.00[CHB][hapmap]
rs17466339	1.00[CHB][hapmap]
rs17466430	1.00[ASN][1000 genomes]
rs17467095	1.00[CHB][hapmap]
rs17491061	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17492138	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17519573	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17520251	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17520278	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1907632	1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[ASN][1000 genomes]
rs1907633	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2244534	1.00[CHB][hapmap]
rs2708405	1.00[CHD][hapmap]
rs57997594	1.00[ASN][1000 genomes]
rs60776971	1.00[ASN][1000 genomes]
rs61007767	1.00[ASN][1000 genomes]
rs7135678	0.88[YRI][hapmap]
rs7294619	1.00[YRI][hapmap]
rs7305155	1.00[YRI][hapmap]
rs73275761	1.00[ASN][1000 genomes]
rs73279554	1.00[ASN][1000 genomes]
rs73279557	1.00[ASN][1000 genomes]
rs9705735	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
LRRK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)