SNP Report
Name | rs10878246   dbSNP |
---|---|
Location | chr:12,40632099 |
Allele | T/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10506153 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[ASN][1000 genomes] |
rs10878226 | 1.00[YRI][hapmap] |
rs10878244 | 0.93[CEU][hapmap];1.00[GIH][hapmap];0.89[MEX][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11175620 | 1.00[YRI][hapmap] |
rs11175645 | 1.00[YRI][hapmap] |
rs11175655 | 0.82[GIH][hapmap];1.00[YRI][hapmap] |
rs11175658 | 1.00[YRI][hapmap] |
rs11175666 | 1.00[YRI][hapmap];0.80[AFR][1000 genomes] |
rs11564122 | 1.00[YRI][hapmap] |
rs11564128 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
rs11564175 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
rs11564177 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[ASN][1000 genomes] |
rs11564203 | 0.82[GIH][hapmap];1.00[ASN][1000 genomes] |
rs11564204 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
rs11564205 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[ASN][1000 genomes] |
rs11564207 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
rs11564267 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
rs11564269 | 1.00[CHD][hapmap] |
rs11829088 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[ASN][1000 genomes] |
rs11834950 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
rs1491936 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
rs17442853 | 1.00[YRI][hapmap] |
rs17443552 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
rs17444096 | 1.00[ASN][1000 genomes] |
rs17444542 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
rs17444570 | 1.00[ASN][1000 genomes] |
rs17458836 | 1.00[YRI][hapmap] |
rs17458974 | 1.00[YRI][hapmap] |
rs17465912 | 1.00[CHB][hapmap] |
rs17466037 | 1.00[CHB][hapmap] |
rs17466339 | 1.00[CHB][hapmap] |
rs17466430 | 1.00[ASN][1000 genomes] |
rs17467095 | 1.00[CHB][hapmap] |
rs17491061 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
rs17492138 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
rs17519573 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17520251 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
rs17520278 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
rs1907632 | 1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[ASN][1000 genomes] |
rs1907633 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
rs2244534 | 1.00[CHB][hapmap] |
rs2708405 | 1.00[CHD][hapmap] |
rs57997594 | 1.00[ASN][1000 genomes] |
rs60776971 | 1.00[ASN][1000 genomes] |
rs61007767 | 1.00[ASN][1000 genomes] |
rs7135678 | 0.88[YRI][hapmap] |
rs7294619 | 1.00[YRI][hapmap] |
rs7305155 | 1.00[YRI][hapmap] |
rs73275761 | 1.00[ASN][1000 genomes] |
rs73279554 | 1.00[ASN][1000 genomes] |
rs73279557 | 1.00[ASN][1000 genomes] |
rs9705735 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
LRRK2 | RNA binding protein mediated regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
GPRC5A | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014