SNP Report
Basic Infomation
| Name | rs2244534 dbSNP |
|---|---|
| Location | chr:12,40576708 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 44)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10506153 | 1.00[CHB][hapmap] |
| rs10878246 | 1.00[CHB][hapmap] |
| rs11564128 | 1.00[CHB][hapmap] |
| rs11564175 | 1.00[CHB][hapmap] |
| rs11564177 | 1.00[CHB][hapmap] |
| rs11564204 | 1.00[CHB][hapmap] |
| rs11564205 | 1.00[CHB][hapmap] |
| rs11564207 | 1.00[CHB][hapmap] |
| rs11564267 | 1.00[CHB][hapmap] |
| rs11829088 | 1.00[CHB][hapmap] |
| rs11834950 | 1.00[CHB][hapmap] |
| rs1388585 | 0.85[YRI][hapmap] |
| rs1491936 | 1.00[CHB][hapmap] |
| rs17443552 | 1.00[CHB][hapmap] |
| rs17465912 | 1.00[CHB][hapmap] |
| rs17466037 | 1.00[CHB][hapmap] |
| rs17466339 | 1.00[CHB][hapmap] |
| rs17491061 | 1.00[CHB][hapmap] |
| rs17519573 | 1.00[CHB][hapmap] |
| rs17520251 | 1.00[CHB][hapmap] |
| rs17520278 | 1.00[CHB][hapmap] |
| rs1907632 | 1.00[CHB][hapmap] |
| rs1907633 | 1.00[CHB][hapmap] |
| rs2244780 | 1.00[YRI][hapmap];0.90[AFR][1000 genomes] |
| rs2253021 | 0.86[AFR][1000 genomes] |
| rs2253171 | 0.85[YRI][hapmap];0.86[AFR][1000 genomes] |
| rs2253867 | 0.86[AFR][1000 genomes] |
| rs2638235 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs2638240 | 1.00[AFR][1000 genomes] |
| rs2638241 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs2638242 | 0.90[AFR][1000 genomes] |
| rs2638243 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs2638261 | 0.85[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs2638265 | 0.85[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs2708403 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs2708405 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs2708406 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs2708416 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs2708460 | 0.86[AFR][1000 genomes] |
| rs2708461 | 0.85[YRI][hapmap];0.86[AFR][1000 genomes] |
| rs2708471 | 1.00[AFR][1000 genomes] |
| rs2708475 | 0.85[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs2708483 | 1.00[AFR][1000 genomes] |
| rs2708484 | 0.85[YRI][hapmap];0.93[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014