SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 21)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10506153	0.84[GIH][hapmap]
rs10878226	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10878244	0.81[GIH][hapmap]
rs10878246	0.82[GIH][hapmap];1.00[YRI][hapmap]
rs11175620	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11175645	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11175658	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11175666	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11564122	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs11564177	0.84[GIH][hapmap]
rs11564203	0.84[GIH][hapmap]
rs11564205	0.84[GIH][hapmap]
rs11829088	0.84[GIH][hapmap]
rs17442853	1.00[YRI][hapmap]
rs17458836	1.00[YRI][hapmap]
rs17458974	1.00[YRI][hapmap]
rs17519573	1.00[YRI][hapmap]
rs1907632	0.88[GIH][hapmap]
rs7135678	0.88[YRI][hapmap]
rs7294619	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7305155	1.00[YRI][hapmap]

rSNP related genes

Symbol	Regulation type
LRRK2	Distal transcriptional regulation
LRRK2	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 2)

eQTL related gene	Source
LRRK2	SCAN
GPA33	SCAN