SNP Report
Basic Infomation
| Name | rs28370720 dbSNP |
|---|---|
| Location | chr:12,40366425 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 61)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs17442095 | 1.00[JPT][hapmap] |
| rs17442346 | 1.00[JPT][hapmap] |
| rs17442353 | 1.00[JPT][hapmap] |
| rs17442490 | 1.00[JPT][hapmap] |
| rs17442882 | 1.00[JPT][hapmap] |
| rs17458257 | 1.00[JPT][hapmap] |
| rs17458745 | 1.00[JPT][hapmap] |
| rs17458773 | 1.00[JPT][hapmap] |
| rs17458974 | 1.00[JPT][hapmap] |
| rs17460894 | 1.00[JPT][hapmap] |
| rs17460992 | 1.00[JPT][hapmap] |
| rs17483502 | 1.00[JPT][hapmap] |
| rs17489344 | 1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17489459 | 1.00[JPT][hapmap] |
| rs17489480 | 1.00[JPT][hapmap] |
| rs17489666 | 1.00[JPT][hapmap] |
| rs17490013 | 1.00[JPT][hapmap] |
| rs17490062 | 1.00[AMR][1000 genomes] |
| rs17490397 | 1.00[AMR][1000 genomes] |
| rs17518014 | 1.00[JPT][hapmap] |
| rs17518050 | 1.00[JPT][hapmap] |
| rs17518183 | 1.00[JPT][hapmap] |
| rs17518427 | 1.00[JPT][hapmap] |
| rs17518441 | 1.00[JPT][hapmap] |
| rs17518476 | 1.00[JPT][hapmap] |
| rs17518532 | 1.00[AMR][1000 genomes] |
| rs17518672 | 1.00[JPT][hapmap] |
| rs17518735 | 1.00[JPT][hapmap] |
| rs17518910 | 1.00[AMR][1000 genomes] |
| rs17519034 | 1.00[AMR][1000 genomes] |
| rs28370603 | 1.00[JPT][hapmap] |
| rs28370641 | 1.00[JPT][hapmap] |
| rs28370650 | 1.00[JPT][hapmap] |
| rs28370657 | 1.00[JPT][hapmap] |
| rs28370694 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370698 | 1.00[JPT][hapmap] |
| rs28370705 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370706 | 1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370707 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs28370714 | 1.00[AMR][1000 genomes] |
| rs28370724 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370728 | 1.00[JPT][hapmap] |
| rs28370730 | 1.00[JPT][hapmap] |
| rs28370743 | 1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370759 | 1.00[JPT][hapmap] |
| rs28370761 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370766 | 1.00[JPT][hapmap] |
| rs28370770 | 1.00[JPT][hapmap] |
| rs28370777 | 1.00[JPT][hapmap] |
| rs28370778 | 1.00[JPT][hapmap] |
| rs28370782 | 1.00[JPT][hapmap] |
| rs28370784 | 1.00[JPT][hapmap] |
| rs28370786 | 1.00[JPT][hapmap] |
| rs28370790 | 1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370792 | 1.00[JPT][hapmap] |
| rs28370793 | 1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370801 | 1.00[JPT][hapmap] |
| rs28370811 | 1.00[JPT][hapmap] |
| rs28370825 | 1.00[JPT][hapmap] |
| rs28740214 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7310416 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | Distal transcriptional regulation |
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014