SNP Report
Basic Infomation
| Name | rs28370694 dbSNP |
|---|---|
| Location | chr:12,40351601 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 31)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11564198 | 0.82[CHB][hapmap] |
| rs17442283 | 1.00[CHB][hapmap] |
| rs17458100 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs17458452 | 1.00[CHB][hapmap] |
| rs17489344 | 1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17489542 | 1.00[CHB][hapmap] |
| rs17490062 | 1.00[AMR][1000 genomes] |
| rs17518134 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs17518532 | 1.00[AMR][1000 genomes] |
| rs17518910 | 1.00[AMR][1000 genomes] |
| rs17519034 | 1.00[AMR][1000 genomes] |
| rs28370638 | 1.00[CHB][hapmap] |
| rs28370640 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs28370664 | 0.83[CHB][hapmap];0.89[JPT][hapmap] |
| rs28370674 | 1.00[CHB][hapmap];0.89[JPT][hapmap] |
| rs28370675 | 1.00[CHB][hapmap];0.89[JPT][hapmap] |
| rs28370705 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370706 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370707 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs28370714 | 1.00[AMR][1000 genomes] |
| rs28370720 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370724 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370729 | 1.00[CHB][hapmap] |
| rs28370743 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370761 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370790 | 1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370793 | 1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370828 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs28740190 | 1.00[CHB][hapmap] |
| rs28740214 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7310416 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014