SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 28)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10878035	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11175023	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12308185	0.87[CEU][hapmap]
rs12322131	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1388592	0.87[CEU][hapmap]
rs17442283	0.82[CHB][hapmap]
rs17442511	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs17443234	0.82[CHB][hapmap]
rs17458100	0.82[CHB][hapmap]
rs17458452	0.82[CHB][hapmap]
rs17489542	0.82[CHB][hapmap]
rs17490692	0.82[CHB][hapmap]
rs17518134	0.82[CHB][hapmap]
rs2404347	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28365208	0.82[CHB][hapmap]
rs28370638	0.82[CHB][hapmap]
rs28370640	0.82[CHB][hapmap]
rs28370674	0.82[CHB][hapmap]
rs28370675	0.82[CHB][hapmap]
rs28370694	0.82[CHB][hapmap]
rs28370729	0.82[CHB][hapmap]
rs28370828	0.81[CHB][hapmap]
rs28740190	0.82[CHB][hapmap]
rs4611275	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs728129	0.84[ASN][1000 genomes]
rs7974495	0.88[CEU][hapmap];0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs931207	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9652020	0.87[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
LRRK2	Distal transcriptional regulation
SLC2A13	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)