SNP Report
Basic Infomation
| Name | rs11175023 dbSNP |
|---|---|
| Location | chr:12,40463668 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10082797 | 0.94[ASW][hapmap];0.81[LWK][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes] |
| rs10878035 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10878081 | 0.85[YRI][hapmap];0.86[AFR][1000 genomes] |
| rs11564198 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12308185 | 0.87[CEU][hapmap] |
| rs12322131 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1388592 | 0.87[CEU][hapmap] |
| rs1482286 | 0.85[YRI][hapmap];0.84[AFR][1000 genomes] |
| rs17442511 | 0.88[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs2404347 | 1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MKK][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4611275 | 1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MKK][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs728129 | 0.92[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs7971218 | 0.94[ASW][hapmap];0.84[LWK][hapmap];0.81[MKK][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes] |
| rs7974495 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs931207 | 1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs9652020 | 0.87[CEU][hapmap] |
| rs9804842 | 0.85[YRI][hapmap];0.86[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RPL30P13 | Proximal transcriptional regulation |
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014