SNP Report
Basic Infomation
| Name | rs9652020 dbSNP |
|---|---|
| Location | chr:12,40547379 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10878035 | 0.85[CEU][hapmap] |
| rs11175023 | 0.87[CEU][hapmap] |
| rs11564198 | 0.87[CEU][hapmap] |
| rs12308185 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1388592 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1388598 | 0.88[GIH][hapmap] |
| rs1491943 | 0.83[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.80[AMR][1000 genomes] |
| rs17442511 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs28365192 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs28365207 | 1.00[JPT][hapmap];0.80[AMR][1000 genomes] |
| rs4291738 | 1.00[JPT][hapmap];0.80[AMR][1000 genomes] |
| rs931207 | 0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000223914 | Proximal transcriptional regulation |
| LRRK2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014