Home
Search
List search
Advanced Search
Data content
Tutorial
About Us
Feedback
rVarBase
SNP Report
Basic Infomation
Name
rs28365207  
dbSNP
Location
chr:12,40616414
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12308185
1.00[JPT][hapmap]
rs1388592
0.87[JPT][hapmap];0.80[AMR][1000 genomes]
rs1388598
0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1491943
1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17442511
1.00[JPT][hapmap]
rs28365192
0.86[JPT][hapmap]
rs4291738
1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs931207
0.87[JPT][hapmap]
rs9652020
1.00[JPT][hapmap];0.80[AMR][1000 genomes]
rSNP related genes
Symbol
Regulation type
LRRK2
Proximal transcriptional regulation
LRRK2
Distal transcriptional regulation
TM7SF2
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)