SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 18)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10878035	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10878036	0.87[ASW][hapmap];0.81[YRI][hapmap]
rs11175023	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MKK][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11564198	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12322131	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17442511	0.88[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2404347	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs520138	0.89[YRI][hapmap]
rs532802	0.80[AFR][1000 genomes]
rs551739	0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs556141	0.81[ASW][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes]
rs561057	0.89[YRI][hapmap]
rs567779	0.83[AFR][1000 genomes]
rs568483	0.89[YRI][hapmap]
rs569631	0.89[YRI][hapmap]
rs728129	0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs7974495	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs931207	0.81[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
SLC2A13	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)