SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 23)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10082797	0.82[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.94[MKK][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10784340	0.81[CHB][hapmap]
rs10877913	0.81[CHB][hapmap]
rs10877955	0.81[CHB][hapmap]
rs10877971	0.81[CHB][hapmap]
rs10878081	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11174831	0.81[CHB][hapmap]
rs11174928	0.85[CHB][hapmap]
rs11175102	0.81[CHB][hapmap]
rs12372213	0.81[CHB][hapmap]
rs1482286	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17442157	0.81[CHB][hapmap]
rs2404347	0.87[ASW][hapmap];0.81[YRI][hapmap]
rs2638253	0.81[CEU][hapmap]
rs28365683	0.81[CHB][hapmap]
rs4611275	0.87[ASW][hapmap];0.81[YRI][hapmap]
rs515291	0.80[CHD][hapmap]
rs520138	0.82[YRI][hapmap]
rs561057	0.80[CHD][hapmap];0.81[YRI][hapmap]
rs568483	0.80[CHD][hapmap];0.81[YRI][hapmap]
rs569631	0.81[YRI][hapmap]
rs7971218	0.82[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.98[MKK][hapmap];0.80[TSI][hapmap];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9804842	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
LRRK2	Distal transcriptional regulation
SLC2A13	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 2)

eQTL related gene	Source
GNAO1	SCAN
C17orf99	SCAN