SNP Report
Basic Infomation
| Name | rs515291 dbSNP |
|---|---|
| Location | chr:12,40402992 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10878036 | 0.80[CHD][hapmap] |
| rs1482283 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs515205 | 0.81[EUR][1000 genomes] |
| rs520138 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs549727 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs551739 | 0.81[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs556141 | 0.87[ASW][hapmap];0.80[LWK][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs561057 | 0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs567779 | 0.82[AFR][1000 genomes] |
| rs568483 | 0.94[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs569631 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs814228 | 0.84[CHD][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC2A13 | Distal transcriptional regulation |
| LRRK2 | Distal transcriptional regulation |
| MUC19 | Distal transcriptional regulation |
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014