SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 15)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1482283	0.80[EUR][1000 genomes]
rs2404347	0.81[ASW][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes]
rs4611275	0.81[ASW][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes]
rs483163	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs515205	0.95[CEU][hapmap];0.82[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs515291	0.87[ASW][hapmap];0.80[LWK][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes]
rs520138	0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs532802	0.95[CEU][hapmap];0.92[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs549727	0.89[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs551739	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs556227	1.00[JPT][hapmap]
rs561057	0.93[ASW][hapmap];0.89[LWK][hapmap];0.80[MKK][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes]
rs567779	0.95[AFR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs568483	0.93[ASW][hapmap];0.89[LWK][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes]
rs569631	0.94[YRI][hapmap];0.86[AFR][1000 genomes]

rSNP related genes

Symbol	Regulation type
SLC2A13	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 1)