SNP Report
Basic Infomation
| Name | rs17489542 dbSNP |
|---|---|
| Location | chr:12,40477474 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11564198 | 0.82[CHB][hapmap] |
| rs17442283 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs17443234 | 1.00[CHB][hapmap];0.90[JPT][hapmap] |
| rs17443546 | 0.89[CHB][hapmap];0.86[JPT][hapmap] |
| rs17458100 | 1.00[CHB][hapmap] |
| rs17458452 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs17466009 | 1.00[CHB][hapmap] |
| rs17484093 | 0.91[CHB][hapmap] |
| rs17490692 | 1.00[CHB][hapmap] |
| rs17490928 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs17518134 | 1.00[CHB][hapmap] |
| rs28365208 | 1.00[CHB][hapmap] |
| rs28370638 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs28370640 | 1.00[CHB][hapmap] |
| rs28370664 | 0.83[CHB][hapmap] |
| rs28370674 | 1.00[CHB][hapmap] |
| rs28370675 | 1.00[CHB][hapmap] |
| rs28370694 | 1.00[CHB][hapmap] |
| rs28370729 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs28370742 | 0.90[JPT][hapmap] |
| rs28370828 | 1.00[CHB][hapmap] |
| rs28740190 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014