SNP Report

Basic Infomation

Name	rs28370782 dbSNP
Location	chr:12,40417167
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 94)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs13377779	1.00[AMR][1000 genomes]
rs17442095	1.00[JPT][hapmap]
rs17442346	1.00[JPT][hapmap]
rs17442353	1.00[JPT][hapmap]
rs17442490	1.00[JPT][hapmap]
rs17442882	1.00[JPT][hapmap]
rs17458257	1.00[JPT][hapmap]
rs17458745	1.00[JPT][hapmap]
rs17458773	1.00[JPT][hapmap]
rs17458974	1.00[JPT][hapmap]
rs17460894	1.00[JPT][hapmap]
rs17460992	1.00[JPT][hapmap]
rs17465716	1.00[JPT][hapmap]
rs17483502	1.00[JPT][hapmap]
rs17489170	1.00[AMR][1000 genomes]
rs17489267	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17489295	0.86[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17489417	0.83[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17489459	1.00[JPT][hapmap]
rs17489466	1.00[AMR][1000 genomes]
rs17489480	1.00[JPT][hapmap]
rs17489522	0.86[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17489583	0.86[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17489666	1.00[JPT][hapmap]
rs17490013	1.00[JPT][hapmap]
rs17490578	1.00[JPT][hapmap]
rs17518014	1.00[JPT][hapmap]
rs17518050	1.00[JPT][hapmap]
rs17518141	0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17518148	0.86[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17518155	0.86[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17518176	0.84[YRI][hapmap]
rs17518183	1.00[JPT][hapmap]
rs17518190	1.00[AMR][1000 genomes]
rs17518322	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17518329	0.86[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17518357	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17518392	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17518427	1.00[JPT][hapmap];0.86[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17518441	1.00[JPT][hapmap]
rs17518476	1.00[JPT][hapmap]
rs17518672	1.00[JPT][hapmap]
rs17518735	1.00[JPT][hapmap]
rs28365202	1.00[JPT][hapmap]
rs28370603	1.00[JPT][hapmap]
rs28370641	1.00[JPT][hapmap]
rs28370650	1.00[JPT][hapmap]
rs28370657	1.00[JPT][hapmap]
rs28370687	1.00[AMR][1000 genomes]
rs28370691	1.00[AMR][1000 genomes]
rs28370698	1.00[JPT][hapmap]
rs28370706	1.00[JPT][hapmap]
rs28370710	1.00[AMR][1000 genomes]
rs28370715	1.00[AMR][1000 genomes]
rs28370716	1.00[AMR][1000 genomes]
rs28370720	1.00[JPT][hapmap]
rs28370728	1.00[JPT][hapmap]
rs28370730	1.00[JPT][hapmap]
rs28370743	1.00[JPT][hapmap]
rs28370749	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28370751	1.00[AMR][1000 genomes]
rs28370759	1.00[JPT][hapmap]
rs28370760	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28370763	0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28370766	1.00[JPT][hapmap]
rs28370769	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28370770	1.00[JPT][hapmap]
rs28370775	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28370777	1.00[JPT][hapmap]
rs28370778	1.00[JPT][hapmap]
rs28370781	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28370784	1.00[JPT][hapmap]
rs28370786	1.00[JPT][hapmap]
rs28370787	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28370788	1.00[AMR][1000 genomes]
rs28370789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28370791	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28370792	1.00[JPT][hapmap]
rs28370801	1.00[JPT][hapmap]
rs28370811	1.00[JPT][hapmap]
rs28370825	1.00[JPT][hapmap]
rs28740215	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28740216	1.00[AMR][1000 genomes]
rs56193998	1.00[AMR][1000 genomes]
rs57966079	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58812092	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59404097	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59663144	1.00[AMR][1000 genomes]
rs60755503	1.00[AMR][1000 genomes]
rs61339615	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74088130	1.00[AMR][1000 genomes]
rs74088192	1.00[AMR][1000 genomes]
rs74089321	1.00[AMR][1000 genomes]
rs74091033	1.00[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
SLC2A13	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)