SNP Report
Basic Infomation
| Name | rs17518141 dbSNP |
|---|---|
| Location | chr:12,40445933 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 150)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12368785 | 1.00[JPT][hapmap] |
| rs12368891 | 1.00[JPT][hapmap] |
| rs13377779 | 1.00[AMR][1000 genomes] |
| rs17442206 | 1.00[JPT][hapmap] |
| rs17442297 | 1.00[JPT][hapmap] |
| rs17442742 | 1.00[JPT][hapmap] |
| rs17442980 | 1.00[JPT][hapmap] |
| rs17443178 | 1.00[JPT][hapmap] |
| rs17443185 | 1.00[JPT][hapmap] |
| rs17443206 | 1.00[JPT][hapmap] |
| rs17443366 | 1.00[JPT][hapmap] |
| rs17443380 | 1.00[JPT][hapmap] |
| rs17443387 | 1.00[JPT][hapmap] |
| rs17458093 | 1.00[JPT][hapmap] |
| rs17458121 | 1.00[JPT][hapmap] |
| rs17458202 | 1.00[JPT][hapmap] |
| rs17458396 | 1.00[JPT][hapmap] |
| rs17458417 | 1.00[JPT][hapmap] |
| rs17458487 | 1.00[JPT][hapmap] |
| rs17458528 | 1.00[JPT][hapmap] |
| rs17458836 | 1.00[JPT][hapmap] |
| rs17461337 | 1.00[JPT][hapmap] |
| rs17465737 | 1.00[JPT][hapmap] |
| rs17465751 | 1.00[JPT][hapmap] |
| rs17483857 | 1.00[JPT][hapmap] |
| rs17483996 | 1.00[JPT][hapmap] |
| rs17489170 | 1.00[JPT][hapmap];1.00[AMR][1000 genomes] |
| rs17489218 | 1.00[JPT][hapmap] |
| rs17489225 | 1.00[JPT][hapmap] |
| rs17489246 | 1.00[JPT][hapmap] |
| rs17489253 | 1.00[JPT][hapmap] |
| rs17489267 | 1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17489295 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17489309 | 0.86[YRI][hapmap] |
| rs17489365 | 1.00[JPT][hapmap] |
| rs17489410 | 1.00[JPT][hapmap] |
| rs17489417 | 1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17489466 | 1.00[JPT][hapmap];1.00[AMR][1000 genomes] |
| rs17489501 | 1.00[JPT][hapmap] |
| rs17489522 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17489583 | 1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17489590 | 1.00[JPT][hapmap] |
| rs17489597 | 1.00[JPT][hapmap] |
| rs17489638 | 1.00[JPT][hapmap] |
| rs17489869 | 1.00[JPT][hapmap] |
| rs17490006 | 1.00[JPT][hapmap] |
| rs17490334 | 1.00[JPT][hapmap] |
| rs17490341 | 1.00[JPT][hapmap] |
| rs17490599 | 1.00[JPT][hapmap] |
| rs17518057 | 1.00[JPT][hapmap] |
| rs17518071 | 1.00[JPT][hapmap] |
| rs17518148 | 1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17518155 | 1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17518176 | 1.00[YRI][hapmap] |
| rs17518190 | 1.00[AMR][1000 genomes] |
| rs17518204 | 1.00[JPT][hapmap] |
| rs17518232 | 1.00[JPT][hapmap] |
| rs17518322 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17518329 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17518343 | 1.00[JPT][hapmap] |
| rs17518357 | 0.92[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17518392 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17518413 | 1.00[JPT][hapmap] |
| rs17518420 | 1.00[JPT][hapmap] |
| rs17518427 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17518532 | 1.00[JPT][hapmap] |
| rs17518910 | 1.00[JPT][hapmap] |
| rs17519531 | 1.00[JPT][hapmap] |
| rs17519566 | 1.00[JPT][hapmap] |
| rs17519580 | 1.00[JPT][hapmap] |
| rs28365178 | 1.00[JPT][hapmap] |
| rs28365191 | 1.00[JPT][hapmap] |
| rs28365203 | 1.00[JPT][hapmap] |
| rs28365211 | 1.00[JPT][hapmap] |
| rs28365682 | 1.00[JPT][hapmap] |
| rs28365690 | 1.00[JPT][hapmap] |
| rs28370601 | 1.00[JPT][hapmap] |
| rs28370605 | 1.00[JPT][hapmap] |
| rs28370608 | 1.00[JPT][hapmap] |
| rs28370616 | 1.00[JPT][hapmap] |
| rs28370643 | 1.00[JPT][hapmap] |
| rs28370649 | 1.00[JPT][hapmap] |
| rs28370652 | 1.00[JPT][hapmap] |
| rs28370655 | 1.00[JPT][hapmap] |
| rs28370658 | 1.00[JPT][hapmap] |
| rs28370665 | 1.00[JPT][hapmap] |
| rs28370670 | 1.00[JPT][hapmap] |
| rs28370672 | 1.00[JPT][hapmap] |
| rs28370673 | 1.00[JPT][hapmap] |
| rs28370682 | 1.00[JPT][hapmap] |
| rs28370686 | 1.00[JPT][hapmap] |
| rs28370687 | 1.00[AMR][1000 genomes] |
| rs28370690 | 1.00[JPT][hapmap] |
| rs28370691 | 1.00[AMR][1000 genomes] |
| rs28370692 | 1.00[JPT][hapmap] |
| rs28370696 | 1.00[JPT][hapmap] |
| rs28370700 | 1.00[JPT][hapmap] |
| rs28370707 | 1.00[JPT][hapmap] |
| rs28370710 | 1.00[AMR][1000 genomes] |
| rs28370715 | 1.00[AMR][1000 genomes] |
| rs28370716 | 1.00[AMR][1000 genomes] |
| rs28370718 | 1.00[JPT][hapmap] |
| rs28370731 | 1.00[JPT][hapmap] |
| rs28370737 | 1.00[JPT][hapmap] |
| rs28370744 | 1.00[JPT][hapmap] |
| rs28370749 | 1.00[AMR][1000 genomes] |
| rs28370750 | 1.00[JPT][hapmap] |
| rs28370751 | 1.00[JPT][hapmap];1.00[AMR][1000 genomes] |
| rs28370755 | 1.00[JPT][hapmap] |
| rs28370760 | 1.00[AMR][1000 genomes] |
| rs28370763 | 0.84[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370764 | 1.00[JPT][hapmap] |
| rs28370765 | 1.00[JPT][hapmap] |
| rs28370767 | 1.00[JPT][hapmap] |
| rs28370768 | 1.00[JPT][hapmap] |
| rs28370769 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370771 | 1.00[JPT][hapmap] |
| rs28370772 | 1.00[JPT][hapmap] |
| rs28370775 | 0.86[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370776 | 1.00[JPT][hapmap] |
| rs28370779 | 1.00[JPT][hapmap] |
| rs28370781 | 0.92[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370782 | 0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370787 | 1.00[JPT][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370788 | 1.00[AMR][1000 genomes] |
| rs28370789 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370791 | 0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370793 | 1.00[JPT][hapmap] |
| rs28370796 | 1.00[JPT][hapmap] |
| rs28370800 | 1.00[JPT][hapmap] |
| rs28370806 | 1.00[JPT][hapmap] |
| rs28370808 | 1.00[JPT][hapmap] |
| rs28370813 | 1.00[JPT][hapmap] |
| rs28370818 | 1.00[JPT][hapmap] |
| rs28370823 | 1.00[JPT][hapmap] |
| rs28370826 | 1.00[JPT][hapmap] |
| rs28740215 | 1.00[AMR][1000 genomes] |
| rs28740216 | 1.00[AMR][1000 genomes] |
| rs4405389 | 1.00[JPT][hapmap] |
| rs56193998 | 1.00[AMR][1000 genomes] |
| rs57966079 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58812092 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59404097 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59663144 | 1.00[AMR][1000 genomes] |
| rs60755503 | 1.00[AMR][1000 genomes] |
| rs61339615 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74088130 | 1.00[AMR][1000 genomes] |
| rs74088192 | 1.00[AMR][1000 genomes] |
| rs74089321 | 1.00[AMR][1000 genomes] |
| rs74091033 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC2A13 | Distal transcriptional regulation |
| LRRK2 | Distal transcriptional regulation |
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014