SNP Report
Basic Infomation
| Name | rs17458396 dbSNP |
|---|---|
| Location | chr:12,40476759 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 160)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10506145 | 0.93[AFR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11564133 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11564139 | 0.87[EUR][1000 genomes] |
| rs11564160 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11564223 | 0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12312535 | 0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12368785 | 1.00[JPT][hapmap] |
| rs12368891 | 1.00[JPT][hapmap] |
| rs1482282 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17442108 | 1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs17442206 | 1.00[JPT][hapmap] |
| rs17442297 | 1.00[JPT][hapmap] |
| rs17442304 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs17442469 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs17442742 | 1.00[JPT][hapmap] |
| rs17442749 | 1.00[JPT][hapmap] |
| rs17442853 | 1.00[JPT][hapmap] |
| rs17442980 | 1.00[JPT][hapmap] |
| rs17443112 | 0.93[AFR][1000 genomes] |
| rs17443178 | 1.00[JPT][hapmap] |
| rs17443185 | 1.00[JPT][hapmap] |
| rs17443206 | 1.00[JPT][hapmap] |
| rs17443366 | 1.00[JPT][hapmap] |
| rs17443380 | 1.00[JPT][hapmap] |
| rs17443387 | 1.00[JPT][hapmap] |
| rs17443504 | 1.00[JPT][hapmap] |
| rs17458093 | 1.00[JPT][hapmap] |
| rs17458121 | 1.00[JPT][hapmap] |
| rs17458202 | 1.00[JPT][hapmap] |
| rs17458299 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs17458403 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17458417 | 1.00[JPT][hapmap] |
| rs17458487 | 1.00[JPT][hapmap] |
| rs17458528 | 1.00[JPT][hapmap] |
| rs17458836 | 1.00[JPT][hapmap] |
| rs17461082 | 1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs17461337 | 1.00[JPT][hapmap] |
| rs17465519 | 0.85[AFR][1000 genomes] |
| rs17465540 | 0.85[AFR][1000 genomes] |
| rs17465737 | 1.00[JPT][hapmap] |
| rs17465751 | 1.00[JPT][hapmap] |
| rs17465807 | 1.00[JPT][hapmap] |
| rs17465877 | 1.00[JPT][hapmap] |
| rs17466002 | 1.00[JPT][hapmap] |
| rs17483628 | 0.85[AFR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs17483857 | 1.00[JPT][hapmap] |
| rs17483996 | 1.00[JPT][hapmap] |
| rs17484176 | 1.00[JPT][hapmap] |
| rs17489170 | 1.00[JPT][hapmap] |
| rs17489218 | 1.00[JPT][hapmap] |
| rs17489225 | 1.00[JPT][hapmap] |
| rs17489246 | 1.00[JPT][hapmap] |
| rs17489253 | 1.00[JPT][hapmap] |
| rs17489267 | 1.00[JPT][hapmap] |
| rs17489365 | 1.00[JPT][hapmap] |
| rs17489410 | 1.00[JPT][hapmap] |
| rs17489417 | 1.00[JPT][hapmap] |
| rs17489466 | 1.00[JPT][hapmap] |
| rs17489501 | 1.00[JPT][hapmap] |
| rs17489583 | 1.00[JPT][hapmap] |
| rs17489590 | 1.00[JPT][hapmap] |
| rs17489597 | 1.00[JPT][hapmap] |
| rs17489638 | 1.00[JPT][hapmap] |
| rs17489869 | 1.00[JPT][hapmap] |
| rs17490006 | 1.00[JPT][hapmap] |
| rs17490334 | 1.00[JPT][hapmap] |
| rs17490341 | 1.00[JPT][hapmap] |
| rs17490599 | 1.00[JPT][hapmap] |
| rs17490769 | 1.00[JPT][hapmap] |
| rs17490796 | 1.00[JPT][hapmap] |
| rs17490810 | 1.00[JPT][hapmap] |
| rs17518057 | 1.00[JPT][hapmap] |
| rs17518071 | 1.00[JPT][hapmap] |
| rs17518141 | 1.00[JPT][hapmap] |
| rs17518148 | 1.00[JPT][hapmap] |
| rs17518155 | 1.00[JPT][hapmap] |
| rs17518204 | 1.00[JPT][hapmap] |
| rs17518232 | 1.00[JPT][hapmap] |
| rs17518343 | 1.00[JPT][hapmap] |
| rs17518413 | 1.00[JPT][hapmap] |
| rs17518420 | 1.00[JPT][hapmap] |
| rs17518532 | 1.00[JPT][hapmap] |
| rs17518910 | 1.00[JPT][hapmap] |
| rs17519531 | 1.00[JPT][hapmap] |
| rs17519566 | 1.00[JPT][hapmap] |
| rs17519580 | 1.00[JPT][hapmap] |
| rs17519615 | 1.00[JPT][hapmap] |
| rs17519671 | 1.00[JPT][hapmap] |
| rs17519811 | 1.00[JPT][hapmap] |
| rs17519825 | 1.00[JPT][hapmap] |
| rs17519832 | 1.00[JPT][hapmap] |
| rs2046929 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2086598 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2404346 | 0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2404574 | 0.85[AFR][1000 genomes];0.88[EUR][1000 genomes] |
| rs28365178 | 1.00[JPT][hapmap] |
| rs28365191 | 1.00[JPT][hapmap] |
| rs28365203 | 1.00[JPT][hapmap] |
| rs28365211 | 1.00[JPT][hapmap] |
| rs28365221 | 1.00[JPT][hapmap] |
| rs28365682 | 1.00[JPT][hapmap] |
| rs28365690 | 1.00[JPT][hapmap] |
| rs28370601 | 1.00[JPT][hapmap] |
| rs28370605 | 1.00[JPT][hapmap] |
| rs28370607 | 1.00[JPT][hapmap] |
| rs28370608 | 1.00[JPT][hapmap] |
| rs28370616 | 1.00[JPT][hapmap] |
| rs28370643 | 1.00[JPT][hapmap] |
| rs28370644 | 0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs28370649 | 1.00[JPT][hapmap] |
| rs28370652 | 1.00[JPT][hapmap] |
| rs28370654 | 1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs28370655 | 1.00[JPT][hapmap] |
| rs28370656 | 1.00[AFR][1000 genomes];0.97[EUR][1000 genomes] |
| rs28370658 | 1.00[JPT][hapmap] |
| rs28370659 | 1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs28370665 | 1.00[JPT][hapmap] |
| rs28370670 | 1.00[JPT][hapmap] |
| rs28370672 | 1.00[JPT][hapmap] |
| rs28370673 | 1.00[JPT][hapmap] |
| rs28370681 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs28370682 | 1.00[JPT][hapmap] |
| rs28370686 | 1.00[JPT][hapmap] |
| rs28370690 | 1.00[JPT][hapmap] |
| rs28370692 | 1.00[JPT][hapmap] |
| rs28370696 | 1.00[JPT][hapmap] |
| rs28370700 | 1.00[JPT][hapmap] |
| rs28370707 | 1.00[JPT][hapmap] |
| rs28370718 | 1.00[JPT][hapmap] |
| rs28370731 | 1.00[JPT][hapmap] |
| rs28370737 | 1.00[JPT][hapmap] |
| rs28370744 | 1.00[JPT][hapmap] |
| rs28370750 | 1.00[JPT][hapmap] |
| rs28370751 | 1.00[JPT][hapmap] |
| rs28370755 | 1.00[JPT][hapmap] |
| rs28370764 | 1.00[JPT][hapmap] |
| rs28370765 | 1.00[JPT][hapmap] |
| rs28370767 | 1.00[JPT][hapmap] |
| rs28370768 | 1.00[JPT][hapmap] |
| rs28370771 | 1.00[JPT][hapmap] |
| rs28370772 | 1.00[JPT][hapmap] |
| rs28370776 | 1.00[JPT][hapmap] |
| rs28370779 | 1.00[JPT][hapmap] |
| rs28370787 | 1.00[JPT][hapmap] |
| rs28370793 | 1.00[JPT][hapmap] |
| rs28370796 | 1.00[JPT][hapmap] |
| rs28370800 | 1.00[JPT][hapmap] |
| rs28370805 | 1.00[JPT][hapmap] |
| rs28370806 | 1.00[JPT][hapmap] |
| rs28370808 | 1.00[JPT][hapmap] |
| rs28370813 | 1.00[JPT][hapmap] |
| rs28370818 | 1.00[JPT][hapmap] |
| rs28370823 | 1.00[JPT][hapmap] |
| rs28370826 | 1.00[JPT][hapmap] |
| rs28740188 | 0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4405389 | 1.00[JPT][hapmap] |
| rs55707305 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7305377 | 0.93[AFR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7969495 | 1.00[AFR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7974522 | 0.93[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014