SNP Report

Basic Infomation

Name	rs2404346 dbSNP
Location	chr:12,40387923
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 29)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10506145	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10877837	0.82[ASN][1000 genomes]
rs11564133	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11564139	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11564160	0.92[EUR][1000 genomes]
rs11564223	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12312535	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1482282	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17442108	0.91[EUR][1000 genomes]
rs17442304	0.92[EUR][1000 genomes]
rs17442469	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17458299	0.92[EUR][1000 genomes]
rs17458396	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17458403	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17483628	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2046929	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2086598	0.92[EUR][1000 genomes]
rs2404574	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28370607	0.82[ASN][1000 genomes]
rs28370611	0.82[ASN][1000 genomes]
rs28370644	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28370654	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28370656	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28370659	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28370681	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28740188	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55707305	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7305377	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7969495	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SLC2A13	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)