SNP Report
Basic Infomation
| Name | rs17443185 dbSNP |
|---|---|
| Location | chr:12,40586107 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 199)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10506144 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs10506154 | 1.00[CEU][hapmap] |
| rs11174697 | 1.00[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs11175186 | 0.93[EUR][1000 genomes] |
| rs11564128 | 1.00[JPT][hapmap] |
| rs11564152 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs11564153 | 1.00[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs11564185 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs11564187 | 1.00[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs11564199 | 1.00[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs11564204 | 1.00[JPT][hapmap] |
| rs11564209 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs11564210 | 1.00[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs11564216 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs11564266 | 1.00[CEU][hapmap] |
| rs11564271 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs12368785 | 1.00[JPT][hapmap] |
| rs12368891 | 1.00[JPT][hapmap] |
| rs12422544 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs12422796 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs12424040 | 0.93[EUR][1000 genomes] |
| rs12426378 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs12426639 | 1.00[CEU][hapmap] |
| rs12427245 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs1365768 | 1.00[CEU][hapmap] |
| rs1365769 | 1.00[CEU][hapmap] |
| rs1388585 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs1388597 | 1.00[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs1463717 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs17442206 | 1.00[JPT][hapmap] |
| rs17442297 | 1.00[JPT][hapmap] |
| rs17442742 | 1.00[JPT][hapmap] |
| rs17442924 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17442980 | 1.00[JPT][hapmap] |
| rs17443178 | 1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs17443206 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17443366 | 1.00[JPT][hapmap] |
| rs17443380 | 1.00[JPT][hapmap] |
| rs17443387 | 1.00[JPT][hapmap] |
| rs17443504 | 1.00[JPT][hapmap] |
| rs17443600 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs17443656 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs17443882 | 1.00[JPT][hapmap] |
| rs17443909 | 0.86[EUR][1000 genomes] |
| rs17443916 | 1.00[JPT][hapmap] |
| rs17443951 | 1.00[JPT][hapmap] |
| rs17444021 | 1.00[JPT][hapmap] |
| rs17444028 | 0.81[EUR][1000 genomes] |
| rs17444033 | 1.00[JPT][hapmap] |
| rs17444054 | 0.81[EUR][1000 genomes] |
| rs17444103 | 1.00[CEU][hapmap] |
| rs17444299 | 1.00[JPT][hapmap] |
| rs17458093 | 1.00[JPT][hapmap] |
| rs17458121 | 1.00[JPT][hapmap] |
| rs17458202 | 1.00[JPT][hapmap] |
| rs17458396 | 1.00[JPT][hapmap] |
| rs17458417 | 1.00[JPT][hapmap] |
| rs17458487 | 1.00[JPT][hapmap] |
| rs17458528 | 1.00[JPT][hapmap] |
| rs17458836 | 1.00[JPT][hapmap] |
| rs17461337 | 1.00[JPT][hapmap] |
| rs17461664 | 0.81[EUR][1000 genomes] |
| rs17465737 | 1.00[JPT][hapmap] |
| rs17465751 | 1.00[JPT][hapmap] |
| rs17465807 | 1.00[JPT][hapmap] |
| rs17465877 | 1.00[JPT][hapmap] |
| rs17465946 | 0.86[EUR][1000 genomes] |
| rs17466002 | 1.00[JPT][hapmap] |
| rs17466016 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs17466143 | 1.00[JPT][hapmap] |
| rs17466206 | 1.00[JPT][hapmap] |
| rs17466213 | 1.00[JPT][hapmap] |
| rs17466241 | 1.00[JPT][hapmap] |
| rs17466458 | 1.00[JPT][hapmap] |
| rs17466514 | 1.00[JPT][hapmap] |
| rs17466535 | 1.00[JPT][hapmap] |
| rs17466584 | 1.00[JPT][hapmap] |
| rs17466612 | 1.00[JPT][hapmap] |
| rs17466626 | 1.00[CEU][hapmap] |
| rs17466907 | 1.00[CEU][hapmap] |
| rs17483857 | 1.00[JPT][hapmap] |
| rs17483996 | 1.00[JPT][hapmap] |
| rs17484003 | 0.93[EUR][1000 genomes] |
| rs17484176 | 1.00[JPT][hapmap] |
| rs17484342 | 0.81[EUR][1000 genomes] |
| rs17484493 | 1.00[CEU][hapmap] |
| rs17489170 | 1.00[JPT][hapmap] |
| rs17489218 | 1.00[JPT][hapmap] |
| rs17489225 | 1.00[JPT][hapmap] |
| rs17489246 | 1.00[JPT][hapmap] |
| rs17489253 | 1.00[JPT][hapmap] |
| rs17489267 | 1.00[JPT][hapmap] |
| rs17489365 | 1.00[JPT][hapmap] |
| rs17489410 | 1.00[JPT][hapmap] |
| rs17489417 | 1.00[JPT][hapmap] |
| rs17489466 | 1.00[JPT][hapmap] |
| rs17489501 | 1.00[JPT][hapmap] |
| rs17489583 | 1.00[JPT][hapmap] |
| rs17489590 | 1.00[JPT][hapmap] |
| rs17489597 | 1.00[JPT][hapmap] |
| rs17489638 | 1.00[JPT][hapmap] |
| rs17489869 | 1.00[JPT][hapmap] |
| rs17490006 | 1.00[JPT][hapmap] |
| rs17490334 | 1.00[JPT][hapmap] |
| rs17490341 | 1.00[JPT][hapmap] |
| rs17490599 | 1.00[JPT][hapmap] |
| rs17490769 | 1.00[JPT][hapmap] |
| rs17490796 | 1.00[JPT][hapmap] |
| rs17490810 | 1.00[JPT][hapmap] |
| rs17491047 | 1.00[JPT][hapmap] |
| rs17491061 | 1.00[JPT][hapmap] |
| rs17491068 | 1.00[JPT][hapmap] |
| rs17491180 | 1.00[JPT][hapmap] |
| rs17491340 | 1.00[JPT][hapmap] |
| rs17491445 | 1.00[JPT][hapmap] |
| rs17491515 | 1.00[JPT][hapmap] |
| rs17491529 | 1.00[JPT][hapmap] |
| rs17491638 | 1.00[JPT][hapmap] |
| rs17491807 | 1.00[JPT][hapmap] |
| rs17491835 | 1.00[JPT][hapmap] |
| rs17491863 | 1.00[JPT][hapmap] |
| rs17518057 | 1.00[JPT][hapmap] |
| rs17518071 | 1.00[JPT][hapmap] |
| rs17518141 | 1.00[JPT][hapmap] |
| rs17518148 | 1.00[JPT][hapmap] |
| rs17518155 | 1.00[JPT][hapmap] |
| rs17518204 | 1.00[JPT][hapmap] |
| rs17518232 | 1.00[JPT][hapmap] |
| rs17518343 | 1.00[JPT][hapmap] |
| rs17518413 | 1.00[JPT][hapmap] |
| rs17518420 | 1.00[JPT][hapmap] |
| rs17518532 | 1.00[JPT][hapmap] |
| rs17518910 | 1.00[JPT][hapmap] |
| rs17519531 | 1.00[JPT][hapmap] |
| rs17519566 | 1.00[JPT][hapmap] |
| rs17519580 | 1.00[JPT][hapmap] |
| rs17519615 | 1.00[JPT][hapmap] |
| rs17519671 | 1.00[JPT][hapmap] |
| rs17519811 | 1.00[JPT][hapmap] |
| rs17519825 | 1.00[JPT][hapmap] |
| rs17519832 | 1.00[JPT][hapmap] |
| rs17519985 | 1.00[JPT][hapmap] |
| rs17520020 | 1.00[JPT][hapmap] |
| rs17520278 | 1.00[JPT][hapmap] |
| rs17520292 | 1.00[JPT][hapmap] |
| rs17520515 | 1.00[JPT][hapmap] |
| rs17520620 | 1.00[JPT][hapmap] |
| rs2708460 | 1.00[EUR][1000 genomes] |
| rs28365169 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs28365173 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs28365178 | 1.00[JPT][hapmap] |
| rs28365191 | 1.00[JPT][hapmap] |
| rs28365203 | 1.00[JPT][hapmap] |
| rs28365211 | 1.00[JPT][hapmap] |
| rs28365221 | 1.00[JPT][hapmap] |
| rs28365226 | 1.00[JPT][hapmap] |
| rs28365229 | 1.00[CEU][hapmap] |
| rs28365233 | 1.00[JPT][hapmap] |
| rs28365682 | 1.00[JPT][hapmap] |
| rs28365689 | 0.93[EUR][1000 genomes] |
| rs28365690 | 1.00[JPT][hapmap] |
| rs28370643 | 1.00[JPT][hapmap] |
| rs28370649 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes] |
| rs28370650 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs28370652 | 1.00[JPT][hapmap] |
| rs28370655 | 1.00[JPT][hapmap] |
| rs28370658 | 1.00[JPT][hapmap] |
| rs28370664 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs28370665 | 1.00[JPT][hapmap] |
| rs28370670 | 1.00[JPT][hapmap] |
| rs28370672 | 1.00[JPT][hapmap] |
| rs28370673 | 1.00[JPT][hapmap] |
| rs28370682 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes] |
| rs28370750 | 1.00[JPT][hapmap] |
| rs28370751 | 1.00[JPT][hapmap] |
| rs28370755 | 1.00[JPT][hapmap] |
| rs28370764 | 1.00[JPT][hapmap] |
| rs28370765 | 1.00[JPT][hapmap] |
| rs28370767 | 1.00[JPT][hapmap] |
| rs28370768 | 1.00[JPT][hapmap] |
| rs28370771 | 1.00[JPT][hapmap] |
| rs28370772 | 1.00[JPT][hapmap] |
| rs28370776 | 1.00[JPT][hapmap] |
| rs28370779 | 1.00[JPT][hapmap] |
| rs28370787 | 1.00[JPT][hapmap] |
| rs28370793 | 1.00[JPT][hapmap] |
| rs28370796 | 1.00[JPT][hapmap] |
| rs28370818 | 1.00[JPT][hapmap] |
| rs28370823 | 1.00[JPT][hapmap] |
| rs28370826 | 1.00[JPT][hapmap] |
| rs28370830 | 0.86[EUR][1000 genomes] |
| rs36212067 | 0.81[EUR][1000 genomes] |
| rs36220738 | 0.81[EUR][1000 genomes] |
| rs3789329 | 1.00[CEU][hapmap] |
| rs4628750 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs4768213 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs4768226 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs4768228 | 0.81[EUR][1000 genomes] |
| rs72547977 | 0.86[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014