SNP Report

Basic Infomation

Name	rs17484003 dbSNP
Location	chr:12,40587521
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 58)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10506144	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10506146	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11174697	0.93[EUR][1000 genomes]
rs11175186	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11564131	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11564152	0.87[EUR][1000 genomes]
rs11564153	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11564185	0.87[EUR][1000 genomes]
rs11564187	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11564199	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11564209	0.87[EUR][1000 genomes]
rs11564210	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11564216	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11564271	0.87[EUR][1000 genomes]
rs12422544	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12422796	0.87[EUR][1000 genomes]
rs12424040	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12425561	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12426378	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12427245	0.87[EUR][1000 genomes]
rs1388585	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1388597	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1463717	0.87[EUR][1000 genomes]
rs1491945	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17442924	0.93[EUR][1000 genomes]
rs17443178	0.86[EUR][1000 genomes]
rs17443185	0.93[EUR][1000 genomes]
rs17443206	0.93[EUR][1000 genomes]
rs17443600	0.87[EUR][1000 genomes]
rs17443656	0.87[EUR][1000 genomes]
rs17443909	0.80[EUR][1000 genomes]
rs17444028	0.87[EUR][1000 genomes]
rs17444054	0.87[EUR][1000 genomes]
rs17461664	0.87[EUR][1000 genomes]
rs17465946	0.80[EUR][1000 genomes]
rs17466016	0.87[EUR][1000 genomes]
rs17483919	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17484342	0.87[EUR][1000 genomes]
rs2131081	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2708460	0.93[EUR][1000 genomes]
rs28365169	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28365173	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28365206	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs28365229	0.80[EUR][1000 genomes]
rs28365689	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28370649	0.86[EUR][1000 genomes]
rs28370650	0.86[EUR][1000 genomes]
rs28370664	0.87[EUR][1000 genomes]
rs28370682	0.93[EUR][1000 genomes]
rs28370830	0.93[EUR][1000 genomes]
rs36212067	0.87[EUR][1000 genomes]
rs36220738	0.87[EUR][1000 genomes]
rs4628750	0.87[EUR][1000 genomes]
rs4768213	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4768226	0.87[EUR][1000 genomes]
rs4768228	0.87[EUR][1000 genomes]
rs535458	1.00[AFR][1000 genomes]
rs72547977	0.80[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
LRRK2	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)