SNP Report

Basic Infomation

Name	rs17461664 dbSNP
Location	chr:12,40651972
Allele	G/T

LD-proxy of rSNPs(r²>0.8) (count: 54)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10506144	0.87[EUR][1000 genomes]
rs10506154	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11175186	0.87[EUR][1000 genomes]
rs11564152	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11564153	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564187	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564210	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564216	0.87[EUR][1000 genomes]
rs11564266	0.83[AMR][1000 genomes]
rs11564271	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12422278	0.81[AMR][1000 genomes]
rs12422544	0.87[EUR][1000 genomes]
rs12422796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12423419	1.00[AFR][1000 genomes]
rs12423551	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12424040	0.87[EUR][1000 genomes]
rs12426378	0.87[EUR][1000 genomes]
rs12426639	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12427245	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1365768	0.83[AMR][1000 genomes]
rs1365769	0.83[AMR][1000 genomes]
rs1388597	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1463717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17442924	0.81[EUR][1000 genomes]
rs17443185	0.81[EUR][1000 genomes]
rs17443206	0.81[EUR][1000 genomes]
rs17443600	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17443656	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17443909	0.81[EUR][1000 genomes]
rs17444028	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17444054	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17461692	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17465946	0.94[EUR][1000 genomes]
rs17466016	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17484003	0.87[EUR][1000 genomes]
rs17484141	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17484342	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17484493	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2708460	0.81[EUR][1000 genomes]
rs28365169	0.87[EUR][1000 genomes]
rs28365173	0.87[EUR][1000 genomes]
rs28365229	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28365689	0.87[EUR][1000 genomes]
rs34567498	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs36212067	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36220738	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3789329	0.81[AMR][1000 genomes]
rs4628750	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4768213	0.87[EUR][1000 genomes]
rs4768226	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4768228	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72547977	0.81[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
LRRK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)