SNP Report

Basic Infomation

Name	rs12423419 dbSNP
Location	chr:12,40707501
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 55)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10506146	1.00[JPT][hapmap]
rs10506154	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10878244	1.00[JPT][hapmap]
rs11564108	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs11564131	1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11564152	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs11564153	1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs11564185	1.00[AFR][1000 genomes]
rs11564187	1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs11564196	1.00[JPT][hapmap]
rs11564209	1.00[AFR][1000 genomes]
rs11564210	1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs11564266	0.84[AMR][1000 genomes]
rs11564271	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12422278	0.82[AMR][1000 genomes]
rs12422544	1.00[JPT][hapmap]
rs12422796	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs12423551	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12425561	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12426639	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12427245	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1365768	0.84[AMR][1000 genomes]
rs1365769	0.84[AMR][1000 genomes]
rs1388585	1.00[JPT][hapmap]
rs1388597	1.00[JPT][hapmap];0.80[AMR][1000 genomes]
rs1463717	1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs1491945	0.85[AMR][1000 genomes]
rs17443600	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs17443656	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs17443882	1.00[CHB][hapmap]
rs17444028	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs17444054	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs17461664	1.00[AFR][1000 genomes]
rs17461692	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17465723	1.00[CHB][hapmap]
rs17466016	0.81[AMR][1000 genomes]
rs17483919	1.00[EUR][1000 genomes]
rs17484141	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17484176	1.00[CHB][hapmap]
rs17484342	0.88[AMR][1000 genomes]
rs17484493	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs17484541	0.80[AMR][1000 genomes]
rs17491124	1.00[CHB][hapmap]
rs17491445	1.00[CHB][hapmap]
rs17497380	1.00[CHB][hapmap]
rs2131081	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs28365206	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28365229	0.88[AMR][1000 genomes]
rs34567498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36212067	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs36220738	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs3789329	0.82[AMR][1000 genomes]
rs4628750	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4768226	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4768228	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
LRRK2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)