SNP Report
Basic Infomation
| Name | rs34567498 dbSNP |
|---|---|
| Location | chr:12,40711054 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 44)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10506154 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes] |
| rs11564108 | 1.00[EUR][1000 genomes] |
| rs11564131 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11564152 | 1.00[AFR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11564153 | 0.84[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11564185 | 1.00[AFR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11564187 | 0.84[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11564209 | 1.00[AFR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11564210 | 0.84[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11564266 | 0.84[AMR][1000 genomes] |
| rs11564271 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12422278 | 0.82[AMR][1000 genomes] |
| rs12422796 | 1.00[AFR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12423419 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12423551 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12425561 | 1.00[EUR][1000 genomes] |
| rs12426639 | 1.00[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs12427245 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1365768 | 0.84[AMR][1000 genomes] |
| rs1365769 | 0.84[AMR][1000 genomes] |
| rs1388597 | 0.80[AMR][1000 genomes] |
| rs1463717 | 1.00[AFR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1491945 | 0.85[AMR][1000 genomes] |
| rs17443600 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs17443656 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs17444028 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17444054 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17461664 | 1.00[AFR][1000 genomes];0.89[ASN][1000 genomes] |
| rs17461692 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs17466016 | 0.81[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs17483919 | 1.00[EUR][1000 genomes] |
| rs17484141 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs17484342 | 0.88[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17484493 | 1.00[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs17484541 | 0.80[AMR][1000 genomes] |
| rs2131081 | 1.00[EUR][1000 genomes] |
| rs28365206 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28365229 | 0.88[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs36212067 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs36220738 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3789329 | 0.82[AMR][1000 genomes] |
| rs4628750 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4768226 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4768228 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014