SNP Report

Basic Infomation

Name	rs28365206 dbSNP
Location	chr:12,40610389
Allele	T/A

LD-proxy of rSNPs(r²>0.8) (count: 41)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10506143	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10506144	1.00[CHB][hapmap]
rs10506146	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10878244	1.00[JPT][hapmap]
rs11175186	1.00[CHB][hapmap]
rs11564108	1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11564131	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564153	0.82[AMR][1000 genomes]
rs11564185	1.00[JPT][hapmap]
rs11564187	1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs11564209	1.00[JPT][hapmap]
rs11564210	1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs11564216	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11564218	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12422544	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12423419	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12423551	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12424294	1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12425561	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12425630	1.00[EUR][1000 genomes]
rs12427022	1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1388585	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs1388597	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs1491945	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17443656	1.00[JPT][hapmap]
rs17458121	1.00[JPT][hapmap]
rs17458230	1.00[JPT][hapmap]
rs17461692	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17466016	1.00[JPT][hapmap]
rs17483919	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17484003	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17484141	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17519825	1.00[JPT][hapmap]
rs2131081	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28365169	1.00[CHB][hapmap]
rs28365173	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28370673	1.00[CEU][hapmap]
rs28370682	1.00[JPT][hapmap]
rs34567498	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4768213	1.00[CHB][hapmap]
rs4768226	1.00[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
MUC19	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)