SNP Report
Basic Infomation
| Name | rs12425630 dbSNP |
|---|---|
| Location | chr:12,40408991 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10506143 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10506144 | 1.00[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs11174631 | 0.86[AMR][1000 genomes] |
| rs11174697 | 1.00[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs11175186 | 1.00[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs11564108 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11564131 | 1.00[EUR][1000 genomes] |
| rs11564199 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs11564216 | 1.00[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs11564218 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12422544 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs12424040 | 1.00[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs12424294 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12425561 | 1.00[EUR][1000 genomes] |
| rs12426378 | 1.00[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs12427022 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17483919 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2131081 | 1.00[EUR][1000 genomes] |
| rs28365169 | 1.00[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs28365173 | 1.00[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs28365206 | 1.00[EUR][1000 genomes] |
| rs28365689 | 1.00[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs28370637 | 0.84[AMR][1000 genomes] |
| rs28370664 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs28370682 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs28370830 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs4768206 | 0.86[AMR][1000 genomes] |
| rs4768213 | 1.00[AFR][1000 genomes];0.89[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | Distal transcriptional regulation |
| MUC19 | Distal transcriptional regulation |
| SLC2A13 | Distal transcriptional regulation |
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014