SNP Report
Basic Infomation
| Name | rs11174631 dbSNP |
|---|---|
| Location | chr:12,40385118 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 36)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10506143 | 0.81[AMR][1000 genomes] |
| rs10506144 | 0.86[AMR][1000 genomes] |
| rs11173598 | 1.00[CHB][hapmap] |
| rs11174115 | 1.00[ASW][hapmap] |
| rs11174697 | 0.89[AMR][1000 genomes] |
| rs11174728 | 1.00[CHB][hapmap] |
| rs11174995 | 1.00[CHB][hapmap] |
| rs11175069 | 1.00[CHB][hapmap] |
| rs11175186 | 0.86[AMR][1000 genomes] |
| rs11564199 | 0.88[AMR][1000 genomes] |
| rs11564216 | 1.00[ASW][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];0.95[MEX][hapmap];0.86[AMR][1000 genomes] |
| rs11564218 | 0.81[AMR][1000 genomes] |
| rs12422544 | 0.82[AMR][1000 genomes] |
| rs12423682 | 1.00[ASW][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap] |
| rs12424040 | 0.86[AMR][1000 genomes] |
| rs12424294 | 0.81[AMR][1000 genomes] |
| rs12425630 | 0.86[AMR][1000 genomes] |
| rs12426378 | 0.86[AMR][1000 genomes] |
| rs12427022 | 0.81[AMR][1000 genomes] |
| rs17559800 | 0.90[MEX][hapmap] |
| rs28365169 | 0.86[AMR][1000 genomes] |
| rs28365173 | 0.86[AMR][1000 genomes] |
| rs28365669 | 1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs28365689 | 0.86[AMR][1000 genomes] |
| rs28370637 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28370664 | 0.91[AMR][1000 genomes] |
| rs28370682 | 1.00[CHB][hapmap];0.91[AMR][1000 genomes] |
| rs28370830 | 0.91[AMR][1000 genomes] |
| rs4768206 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4768213 | 0.86[AMR][1000 genomes] |
| rs535458 | 1.00[ASW][hapmap];1.00[MEX][hapmap] |
| rs545385 | 1.00[ASW][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap] |
| rs549790 | 1.00[ASW][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap] |
| rs566044 | 1.00[JPT][hapmap] |
| rs8181671 | 1.00[CHB][hapmap] |
| rs953493 | 0.90[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014