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rVarBase
SNP Report
Basic Infomation
Name
rs28365669  
dbSNP
Location
chr:12,40380596
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11174631
1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11174697
0.83[AMR][1000 genomes]
rs11564199
0.81[AMR][1000 genomes]
rs12423682
1.00[JPT][hapmap]
rs28370637
1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28370664
0.84[AMR][1000 genomes]
rs28370682
0.84[AMR][1000 genomes]
rs28370830
0.84[AMR][1000 genomes]
rs4768206
1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs545385
1.00[JPT][hapmap]
rs549790
1.00[JPT][hapmap]
rs566044
0.87[AMR][1000 genomes]
rSNP related genes
Symbol
Regulation type
SLC2A13
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)