SNP Report
Basic Infomation
| Name | rs566044 dbSNP |
|---|---|
| Location | chr:12,40366640 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11174631 | 1.00[JPT][hapmap] |
| rs12423682 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12423983 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17560267 | 0.80[AMR][1000 genomes] |
| rs1874558 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2173134 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs28365669 | 0.87[AMR][1000 genomes] |
| rs28370602 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs28370606 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs28370637 | 0.82[AMR][1000 genomes] |
| rs28740171 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs4768206 | 1.00[JPT][hapmap] |
| rs535458 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs545385 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs549790 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | Distal transcriptional regulation |
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014