SNP Report
Basic Infomation
| Name | rs2173134 dbSNP |
|---|---|
| Location | chr:12,40343151 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12423473 | 1.00[JPT][hapmap] |
| rs12423682 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12423983 | 0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12425167 | 1.00[JPT][hapmap];0.88[AMR][1000 genomes] |
| rs17559478 | 1.00[JPT][hapmap];0.87[AMR][1000 genomes] |
| rs17559800 | 1.00[JPT][hapmap];0.88[AMR][1000 genomes] |
| rs17560267 | 1.00[JPT][hapmap];0.90[AMR][1000 genomes] |
| rs17560365 | 1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1874558 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28370602 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs28370606 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs28740171 | 0.95[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs535458 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs545385 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs549790 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs566044 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs953493 | 1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014