SNP Report
Name | rs535458   dbSNP |
---|---|
Location | chr:12,40365383 |
Allele | C/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs11174115 | 1.00[ASW][hapmap] |
rs11174631 | 1.00[ASW][hapmap];1.00[MEX][hapmap] |
rs11564216 | 1.00[ASW][hapmap];0.95[MEX][hapmap] |
rs12423473 | 1.00[JPT][hapmap] |
rs12423682 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.84[TSI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12423983 | 0.97[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs12425167 | 1.00[JPT][hapmap];0.88[AMR][1000 genomes] |
rs12425561 | 1.00[AFR][1000 genomes] |
rs17483919 | 1.00[AFR][1000 genomes] |
rs17484003 | 1.00[AFR][1000 genomes] |
rs17559478 | 1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs17559800 | 1.00[JPT][hapmap];0.90[MEX][hapmap];0.88[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs17560267 | 1.00[JPT][hapmap];0.90[AMR][1000 genomes] |
rs17560365 | 0.82[AMR][1000 genomes];0.90[ASN][1000 genomes] |
rs1874558 | 0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs2131081 | 1.00[AFR][1000 genomes] |
rs2173134 | 1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs28370602 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs28370606 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs28740171 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs545385 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs549790 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs566044 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rs953493 | 1.00[JPT][hapmap];0.90[MEX][hapmap] |
Symbol | Regulation type |
---|---|
LRRK2 | Distal transcriptional regulation |
SLC2A13 | RNA binding protein mediated regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
ABL2 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014