SNP Report
Basic Infomation
| Name | rs953493 dbSNP |
|---|---|
| Location | chr:12,40286102 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11174115 | 0.82[MEX][hapmap] |
| rs11174631 | 0.90[MEX][hapmap] |
| rs11564216 | 0.95[MEX][hapmap] |
| rs12423473 | 1.00[JPT][hapmap] |
| rs12423682 | 1.00[LWK][hapmap];0.90[MEX][hapmap] |
| rs12424971 | 0.91[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12425167 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs12427424 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17559478 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs17559800 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[ASN][1000 genomes] |
| rs17560267 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap] |
| rs2173134 | 1.00[JPT][hapmap] |
| rs535458 | 1.00[JPT][hapmap];0.90[MEX][hapmap] |
| rs545385 | 0.90[MEX][hapmap] |
| rs549790 | 0.90[MEX][hapmap] |
| rs67987793 | 0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs73276518 | 0.90[EUR][1000 genomes] |
| rs73276523 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C12orf40 | RNA binding protein mediated regulation |
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014