SNP Report

Basic Infomation

Name	rs17559478 dbSNP
Location	chr:12,40297507
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 50)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1086490	1.00[JPT][hapmap]
rs10877837	1.00[JPT][hapmap]
rs11174370	1.00[JPT][hapmap]
rs11564133	1.00[JPT][hapmap]
rs11564139	1.00[JPT][hapmap]
rs11564160	1.00[JPT][hapmap]
rs11564223	1.00[JPT][hapmap]
rs11564282	1.00[JPT][hapmap]
rs12312535	1.00[JPT][hapmap]
rs12371119	1.00[JPT][hapmap]
rs12423473	1.00[JPT][hapmap]
rs12423682	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12423983	0.84[AMR][1000 genomes]
rs12425167	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12427424	0.82[ASN][1000 genomes]
rs12810368	1.00[JPT][hapmap]
rs12827948	1.00[JPT][hapmap]
rs1482282	1.00[JPT][hapmap]
rs17442304	1.00[JPT][hapmap]
rs17442469	1.00[JPT][hapmap]
rs17559800	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17560267	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17560365	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1874558	0.85[AMR][1000 genomes]
rs2046929	1.00[JPT][hapmap]
rs2173134	1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs28370602	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28370606	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28370644	1.00[JPT][hapmap]
rs28370656	1.00[JPT][hapmap]
rs28370659	1.00[JPT][hapmap]
rs28740171	0.82[AMR][1000 genomes]
rs4238078	1.00[JPT][hapmap]
rs4399379	1.00[JPT][hapmap]
rs4427625	1.00[JPT][hapmap]
rs4639999	1.00[JPT][hapmap]
rs4768181	1.00[JPT][hapmap]
rs4768182	1.00[JPT][hapmap]
rs535458	1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs545385	0.87[AMR][1000 genomes]
rs549790	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs59081843	0.83[AFR][1000 genomes]
rs6581338	1.00[JPT][hapmap]
rs73276523	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7969296	1.00[JPT][hapmap]
rs7969495	1.00[JPT][hapmap]
rs7975209	1.00[JPT][hapmap]
rs953493	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9645805	1.00[JPT][hapmap]
rs992851	1.00[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
C12orf40	RNA binding protein mediated regulation
SLC2A13	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)