SNP Report
Basic Infomation
| Name | rs992851 dbSNP |
|---|---|
| Location | chr:12,40371492 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 39)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10506145 | 1.00[JPT][hapmap] |
| rs1086490 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10877837 | 0.83[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes] |
| rs11173862 | 1.00[ASW][hapmap] |
| rs11174370 | 1.00[ASW][hapmap];0.81[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[MKK][hapmap];0.90[TSI][hapmap] |
| rs11174427 | 0.83[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs11174533 | 0.82[EUR][1000 genomes] |
| rs11564133 | 1.00[JPT][hapmap] |
| rs11564139 | 1.00[JPT][hapmap] |
| rs11564160 | 1.00[JPT][hapmap] |
| rs11564194 | 1.00[JPT][hapmap] |
| rs11564221 | 1.00[ASW][hapmap];0.81[CEU][hapmap];0.88[GIH][hapmap];0.83[LWK][hapmap];0.93[MKK][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs11564223 | 1.00[JPT][hapmap] |
| rs11564282 | 1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12312535 | 1.00[JPT][hapmap] |
| rs12371119 | 0.80[CEU][hapmap];1.00[JPT][hapmap] |
| rs12810368 | 1.00[JPT][hapmap] |
| rs12827948 | 1.00[JPT][hapmap] |
| rs1482282 | 1.00[JPT][hapmap] |
| rs17442304 | 1.00[JPT][hapmap] |
| rs17442469 | 1.00[JPT][hapmap] |
| rs17442756 | 1.00[JPT][hapmap] |
| rs17483628 | 1.00[JPT][hapmap] |
| rs17559478 | 1.00[JPT][hapmap] |
| rs17559744 | 0.87[GIH][hapmap] |
| rs2046929 | 1.00[JPT][hapmap] |
| rs2404574 | 1.00[JPT][hapmap] |
| rs28370607 | 0.83[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs28370611 | 0.85[EUR][1000 genomes] |
| rs28370644 | 1.00[JPT][hapmap] |
| rs28370656 | 1.00[JPT][hapmap] |
| rs28370659 | 1.00[JPT][hapmap] |
| rs4399379 | 1.00[JPT][hapmap] |
| rs7306718 | 1.00[JPT][hapmap] |
| rs7311756 | 0.88[GIH][hapmap];0.84[MKK][hapmap] |
| rs73280629 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7484475 | 1.00[JPT][hapmap] |
| rs7969495 | 1.00[JPT][hapmap] |
| rs7974972 | 1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014