SNP Report
Basic Infomation
| Name | rs11174427 dbSNP |
|---|---|
| Location | chr:12,40343704 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10506138 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs1086490 | 0.83[CEU][hapmap] |
| rs10877779 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs10877837 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11174266 | 1.00[ASN][1000 genomes] |
| rs11174285 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs11174292 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs11174293 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
| rs11174299 | 0.86[ASN][1000 genomes] |
| rs11174370 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11174532 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs11174533 | 0.93[EUR][1000 genomes] |
| rs11174536 | 0.80[EUR][1000 genomes] |
| rs11514248 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11564221 | 1.00[CEU][hapmap];0.98[EUR][1000 genomes] |
| rs11564282 | 0.83[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs12371119 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs28370607 | 1.00[CEU][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28370611 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4128689 | 1.00[CHB][hapmap] |
| rs73280629 | 0.86[EUR][1000 genomes] |
| rs74089317 | 1.00[ASN][1000 genomes] |
| rs992851 | 0.83[CEU][hapmap];0.85[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC2A13 | Proximal transcriptional regulation |
| SLC2A13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014