SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 16)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10506138	1.00[ASW][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10877779	1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11173862	0.88[CEU][hapmap];0.83[CHD][hapmap]
rs11174266	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174285	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174299	0.86[ASN][1000 genomes]
rs11174370	1.00[CHB][hapmap];0.88[GIH][hapmap];0.82[MKK][hapmap];0.86[ASN][1000 genomes]
rs11174427	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11514248	1.00[ASN][1000 genomes]
rs11564221	0.88[GIH][hapmap]
rs12371119	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs17559744	0.87[GIH][hapmap]
rs4128689	1.00[CHB][hapmap];0.83[CHD][hapmap];0.88[GIH][hapmap];0.81[TSI][hapmap]
rs7311756	0.88[GIH][hapmap]
rs74089317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SLC2A13	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 1)