SNP Report
Name | rs11174370   dbSNP |
---|---|
Location | chr:12,40330822 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10506138 | 1.00[CHB][hapmap];0.88[GIH][hapmap];0.82[MKK][hapmap];0.86[ASN][1000 genomes] |
rs1086490 | 0.81[CEU][hapmap];1.00[JPT][hapmap] |
rs10877779 | 1.00[CHB][hapmap];0.86[ASN][1000 genomes] |
rs10877837 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes] |
rs11173671 | 1.00[CHD][hapmap] |
rs11173862 | 1.00[ASW][hapmap] |
rs11174266 | 0.86[ASN][1000 genomes] |
rs11174285 | 1.00[CHB][hapmap];0.86[ASN][1000 genomes] |
rs11174292 | 1.00[CHB][hapmap];0.88[GIH][hapmap];0.82[MKK][hapmap];0.86[ASN][1000 genomes] |
rs11174293 | 1.00[CHB][hapmap];0.86[ASN][1000 genomes] |
rs11174427 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs11174532 | 0.83[EUR][1000 genomes] |
rs11174533 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs11514248 | 0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs11564133 | 1.00[JPT][hapmap] |
rs11564139 | 1.00[JPT][hapmap] |
rs11564160 | 1.00[JPT][hapmap] |
rs11564221 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs11564223 | 1.00[JPT][hapmap] |
rs11564282 | 0.81[CEU][hapmap];1.00[JPT][hapmap] |
rs12312535 | 1.00[JPT][hapmap] |
rs12371119 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12810368 | 1.00[JPT][hapmap] |
rs12827948 | 1.00[JPT][hapmap] |
rs1482282 | 1.00[JPT][hapmap] |
rs17442108 | 1.00[JPT][hapmap] |
rs17442304 | 1.00[JPT][hapmap] |
rs17442469 | 1.00[JPT][hapmap] |
rs17461082 | 1.00[JPT][hapmap] |
rs17483628 | 1.00[JPT][hapmap] |
rs17559478 | 1.00[JPT][hapmap] |
rs2046929 | 1.00[JPT][hapmap] |
rs28370607 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs28370611 | 0.80[AFR][1000 genomes];0.89[EUR][1000 genomes] |
rs28370644 | 1.00[JPT][hapmap] |
rs28370654 | 1.00[JPT][hapmap] |
rs28370656 | 1.00[JPT][hapmap] |
rs28370659 | 1.00[JPT][hapmap] |
rs28370681 | 1.00[JPT][hapmap] |
rs28370805 | 1.00[JPT][hapmap] |
rs4128689 | 1.00[CHB][hapmap] |
rs4399379 | 1.00[JPT][hapmap] |
rs7311756 | 1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap] |
rs74089317 | 0.86[ASN][1000 genomes] |
rs7969495 | 1.00[JPT][hapmap] |
rs992851 | 1.00[ASW][hapmap];0.81[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.96[MKK][hapmap];0.90[TSI][hapmap] |
Symbol | Regulation type |
---|---|
SLC2A13 | RNA binding protein mediated regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
ICAM5 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014